Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3009 and GFF3010 are separated by 395 nucleotides GFF3010 and GFF3011 overlap by 11 nucleotides GFF3011 and GFF3012 are separated by 48 nucleotides
GFF3009 - NADP-specific glutamate dehydrogenase (EC 1.4.1.4), at 436,232 to 437,575
GFF3009
GFF3010 - no description, at 437,971 to 438,114
GFF3010
GFF3011 - T6SS component TssB (ImpB/VipA), at 438,104 to 438,679
GFF3011
GFF3012 - T6SS component TssC (ImpC/VipB), at 438,728 to 440,239
GFF3012
Position (kb) 438
439 Strain fitness (log2 ratio) -2
-1
0
1 at 437.307 kb on + strand, within GFF3009 at 437.307 kb on + strand, within GFF3009 at 437.307 kb on + strand, within GFF3009 at 437.308 kb on - strand, within GFF3009 at 437.308 kb on - strand, within GFF3009 at 437.308 kb on - strand, within GFF3009 at 437.445 kb on + strand at 437.445 kb on + strand at 437.466 kb on + strand at 437.466 kb on + strand at 437.466 kb on + strand at 437.467 kb on - strand at 437.467 kb on - strand at 437.467 kb on - strand at 437.467 kb on - strand at 437.467 kb on - strand at 437.508 kb on + strand at 437.508 kb on + strand at 437.508 kb on + strand at 437.508 kb on + strand at 437.509 kb on - strand at 437.509 kb on - strand at 437.509 kb on - strand at 437.509 kb on - strand at 437.605 kb on + strand at 437.605 kb on + strand at 437.605 kb on + strand at 437.606 kb on - strand at 437.768 kb on + strand at 437.831 kb on + strand at 437.831 kb on + strand at 437.831 kb on + strand at 437.846 kb on + strand at 437.846 kb on + strand at 437.846 kb on + strand at 437.847 kb on - strand at 437.847 kb on - strand at 437.847 kb on - strand at 437.847 kb on - strand at 437.847 kb on - strand at 437.868 kb on + strand at 437.868 kb on + strand at 437.868 kb on + strand at 437.868 kb on + strand at 437.868 kb on + strand at 437.868 kb on + strand at 437.869 kb on - strand at 437.869 kb on - strand at 437.869 kb on - strand at 437.869 kb on - strand at 437.869 kb on - strand at 437.870 kb on + strand at 437.870 kb on + strand at 437.871 kb on - strand at 437.871 kb on - strand at 437.871 kb on - strand at 437.871 kb on - strand at 437.871 kb on - strand at 437.871 kb on - strand at 437.889 kb on + strand at 437.889 kb on + strand at 437.890 kb on - strand at 437.890 kb on - strand at 437.890 kb on - strand at 437.890 kb on - strand at 437.890 kb on - strand at 437.903 kb on + strand at 437.903 kb on + strand at 437.955 kb on + strand at 437.955 kb on + strand at 437.955 kb on + strand at 437.956 kb on - strand at 437.956 kb on - strand at 437.956 kb on - strand at 437.958 kb on + strand at 437.974 kb on + strand at 437.974 kb on + strand at 437.975 kb on - strand at 438.112 kb on + strand at 438.112 kb on + strand at 438.112 kb on + strand at 438.112 kb on + strand at 438.113 kb on - strand at 438.113 kb on - strand at 438.113 kb on - strand at 438.113 kb on - strand at 438.113 kb on - strand at 438.113 kb on - strand at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.164 kb on + strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.165 kb on - strand, within GFF3011 at 438.735 kb on + strand at 438.735 kb on + strand at 438.735 kb on + strand at 438.735 kb on + strand at 438.735 kb on + strand at 438.735 kb on + strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.827 kb on + strand at 438.827 kb on + strand at 438.828 kb on - strand at 438.828 kb on - strand at 438.866 kb on + strand at 438.866 kb on + strand at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.190 kb on + strand, within GFF3012 at 439.191 kb on - strand, within GFF3012 at 439.191 kb on - strand, within GFF3012 at 439.191 kb on - strand, within GFF3012 at 439.191 kb on - strand, within GFF3012 at 439.191 kb on - strand, within GFF3012 at 439.202 kb on + strand, within GFF3012 at 439.202 kb on + strand, within GFF3012 at 439.211 kb on + strand, within GFF3012 at 439.211 kb on + strand, within GFF3012 at 439.211 kb on + strand, within GFF3012 at 439.211 kb on + strand, within GFF3012 at 439.212 kb on - strand, within GFF3012 at 439.212 kb on - strand, within GFF3012 at 439.212 kb on - strand, within GFF3012 at 439.226 kb on + strand, within GFF3012 at 439.226 kb on + strand, within GFF3012 at 439.247 kb on + strand, within GFF3012 at 439.247 kb on + strand, within GFF3012 at 439.247 kb on + strand, within GFF3012 at 439.247 kb on + strand, within GFF3012 at 439.247 kb on + strand, within GFF3012 at 439.248 kb on - strand, within GFF3012 at 439.250 kb on + strand, within GFF3012 at 439.250 kb on + strand, within GFF3012 at 439.250 kb on + strand, within GFF3012 at 439.250 kb on + strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.251 kb on - strand, within GFF3012 at 439.463 kb on + strand, within GFF3012 at 439.463 kb on + strand, within GFF3012 at 439.463 kb on + strand, within GFF3012 at 439.463 kb on + strand, within GFF3012 at 439.487 kb on + strand, within GFF3012 at 439.487 kb on + strand, within GFF3012 at 439.488 kb on - strand, within GFF3012 at 439.541 kb on + strand, within GFF3012 at 439.541 kb on + strand, within GFF3012 at 439.541 kb on + strand, within GFF3012 at 439.542 kb on - strand, within GFF3012 at 439.577 kb on + strand, within GFF3012 at 439.577 kb on + strand, within GFF3012 at 439.577 kb on + strand, within GFF3012 at 439.577 kb on + strand, within GFF3012 at 439.578 kb on - strand, within GFF3012 at 439.578 kb on - strand, within GFF3012 at 439.578 kb on - strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.637 kb on + strand, within GFF3012 at 439.638 kb on - strand, within GFF3012 at 439.638 kb on - strand, within GFF3012 at 439.638 kb on - strand, within GFF3012
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 437,307 + GFF3009 0.80 -0.5 437,307 + GFF3009 0.80 -0.3 437,307 + GFF3009 0.80 +0.1 437,308 - GFF3009 0.80 -0.2 437,308 - GFF3009 0.80 -0.3 437,308 - GFF3009 0.80 -0.2 437,445 + -0.5 437,445 + +1.2 437,466 + +0.2 437,466 + +0.4 437,466 + -0.1 437,467 - +0.6 437,467 - +0.0 437,467 - -0.0 437,467 - +0.0 437,467 - -0.1 437,508 + +0.3 437,508 + -0.8 437,508 + -0.2 437,508 + -0.4 437,509 - -0.7 437,509 - -0.7 437,509 - +0.0 437,509 - +0.5 437,605 + -2.0 437,605 + -1.6 437,605 + -0.1 437,606 - +0.3 437,768 + -0.4 437,831 + +0.2 437,831 + -0.3 437,831 + +0.3 437,846 + -0.9 437,846 + -0.6 437,846 + +0.0 437,847 - -1.6 437,847 - +0.3 437,847 - +0.2 437,847 - -0.2 437,847 - +0.3 437,868 + -1.0 437,868 + -0.7 437,868 + -2.4 437,868 + +0.2 437,868 + -0.3 437,868 + +0.4 437,869 - +1.6 437,869 - -1.1 437,869 - +1.4 437,869 - +0.0 437,869 - -0.5 437,870 + -0.5 437,870 + -0.6 437,871 - +0.1 437,871 - +0.6 437,871 - -0.5 437,871 - +0.0 437,871 - +0.8 437,871 - +0.0 437,889 + -0.1 437,889 + -0.2 437,890 - -0.4 437,890 - +0.3 437,890 - +0.6 437,890 - +0.9 437,890 - -0.5 437,903 + +0.1 437,903 + -1.2 437,955 + +0.4 437,955 + -1.2 437,955 + -0.3 437,956 - +0.2 437,956 - +0.6 437,956 - -0.6 437,958 + +0.2 437,974 + -0.4 437,974 + -0.8 437,975 - -1.1 438,112 + +1.0 438,112 + -1.1 438,112 + -0.1 438,112 + -0.7 438,113 - +0.1 438,113 - -0.3 438,113 - -0.6 438,113 - -0.9 438,113 - +0.1 438,113 - +0.3 438,164 + GFF3011 0.10 -0.2 438,164 + GFF3011 0.10 -0.3 438,164 + GFF3011 0.10 +0.0 438,164 + GFF3011 0.10 -0.2 438,164 + GFF3011 0.10 -0.1 438,164 + GFF3011 0.10 -0.6 438,164 + GFF3011 0.10 +0.0 438,164 + GFF3011 0.10 -0.3 438,164 + GFF3011 0.10 -0.7 438,164 + GFF3011 0.10 -0.1 438,164 + GFF3011 0.10 +0.6 438,164 + GFF3011 0.10 +1.6 438,164 + GFF3011 0.10 -0.2 438,164 + GFF3011 0.10 +0.1 438,164 + GFF3011 0.10 -1.0 438,164 + GFF3011 0.10 -0.4 438,164 + GFF3011 0.10 -0.4 438,164 + GFF3011 0.10 -1.6 438,164 + GFF3011 0.10 +0.6 438,164 + GFF3011 0.10 +0.6 438,164 + GFF3011 0.10 -0.0 438,165 - GFF3011 0.11 -0.2 438,165 - GFF3011 0.11 +0.3 438,165 - GFF3011 0.11 -0.8 438,165 - GFF3011 0.11 -0.2 438,165 - GFF3011 0.11 +0.4 438,165 - GFF3011 0.11 -0.7 438,165 - GFF3011 0.11 +1.1 438,165 - GFF3011 0.11 +0.1 438,165 - GFF3011 0.11 -0.1 438,165 - GFF3011 0.11 -0.2 438,165 - GFF3011 0.11 +0.2 438,165 - GFF3011 0.11 -0.4 438,165 - GFF3011 0.11 +0.7 438,165 - GFF3011 0.11 +0.2 438,165 - GFF3011 0.11 -0.1 438,735 + -0.2 438,735 + +0.5 438,735 + -1.0 438,735 + -0.0 438,735 + +1.3 438,735 + +0.0 438,736 - +0.6 438,736 - -0.1 438,736 - -0.4 438,736 - -1.3 438,736 - +0.9 438,827 + +0.0 438,827 + +0.4 438,828 - +0.0 438,828 - +1.0 438,866 + +0.1 438,866 + +0.0 439,190 + GFF3012 0.31 -1.0 439,190 + GFF3012 0.31 +0.1 439,190 + GFF3012 0.31 +0.1 439,190 + GFF3012 0.31 -0.6 439,190 + GFF3012 0.31 -0.3 439,190 + GFF3012 0.31 +0.1 439,190 + GFF3012 0.31 +0.3 439,191 - GFF3012 0.31 +0.6 439,191 - GFF3012 0.31 +0.6 439,191 - GFF3012 0.31 -1.0 439,191 - GFF3012 0.31 +0.6 439,191 - GFF3012 0.31 +0.1 439,202 + GFF3012 0.31 -0.6 439,202 + GFF3012 0.31 -1.0 439,211 + GFF3012 0.32 -0.1 439,211 + GFF3012 0.32 -0.1 439,211 + GFF3012 0.32 -0.5 439,211 + GFF3012 0.32 -0.4 439,212 - GFF3012 0.32 -0.1 439,212 - GFF3012 0.32 -0.4 439,212 - GFF3012 0.32 -0.9 439,226 + GFF3012 0.33 -0.1 439,226 + GFF3012 0.33 +0.0 439,247 + GFF3012 0.34 +0.0 439,247 + GFF3012 0.34 -0.2 439,247 + GFF3012 0.34 -0.4 439,247 + GFF3012 0.34 +0.1 439,247 + GFF3012 0.34 -0.1 439,248 - GFF3012 0.34 -0.1 439,250 + GFF3012 0.35 -0.2 439,250 + GFF3012 0.35 -0.9 439,250 + GFF3012 0.35 -0.1 439,250 + GFF3012 0.35 -0.2 439,251 - GFF3012 0.35 -0.0 439,251 - GFF3012 0.35 +0.7 439,251 - GFF3012 0.35 -1.4 439,251 - GFF3012 0.35 -0.5 439,251 - GFF3012 0.35 -0.2 439,251 - GFF3012 0.35 +0.9 439,251 - GFF3012 0.35 -0.6 439,251 - GFF3012 0.35 +0.1 439,463 + GFF3012 0.49 -1.3 439,463 + GFF3012 0.49 -0.5 439,463 + GFF3012 0.49 +0.3 439,463 + GFF3012 0.49 -0.1 439,487 + GFF3012 0.50 -1.1 439,487 + GFF3012 0.50 -0.4 439,488 - GFF3012 0.50 -1.9 439,541 + GFF3012 0.54 -0.7 439,541 + GFF3012 0.54 +1.6 439,541 + GFF3012 0.54 +0.3 439,542 - GFF3012 0.54 +0.7 439,577 + GFF3012 0.56 -0.2 439,577 + GFF3012 0.56 +1.0 439,577 + GFF3012 0.56 -0.4 439,577 + GFF3012 0.56 -0.6 439,578 - GFF3012 0.56 +0.1 439,578 - GFF3012 0.56 +0.1 439,578 - GFF3012 0.56 -0.3 439,637 + GFF3012 0.60 -0.4 439,637 + GFF3012 0.60 +0.7 439,637 + GFF3012 0.60 -0.1 439,637 + GFF3012 0.60 +0.2 439,637 + GFF3012 0.60 +0.4 439,637 + GFF3012 0.60 -1.4 439,637 + GFF3012 0.60 -0.9 439,638 - GFF3012 0.60 +0.2 439,638 - GFF3012 0.60 -1.1 439,638 - GFF3012 0.60 -0.8
Or see this region's nucleotide sequence