Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF29 and GFF30 are separated by 117 nucleotides GFF30 and GFF31 overlap by 4 nucleotides GFF31 and GFF32 overlap by 4 nucleotides
GFF29 - tRNA-modifying protein YgfZ, at 33,392 to 34,327
GFF29
GFF30 - Murein endolytic transglycosylase MltG, at 34,445 to 35,467
GFF30
GFF31 - Thymidylate kinase (EC 2.7.4.9), at 35,464 to 36,135
GFF31
GFF32 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 36,132 to 37,145
GFF32
Position (kb) 34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.336 kb on + strand at 34.336 kb on + strand at 34.931 kb on + strand, within GFF30 at 34.931 kb on + strand, within GFF30 at 34.937 kb on + strand, within GFF30 at 35.183 kb on + strand, within GFF30 at 35.183 kb on + strand, within GFF30 at 35.183 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.348 kb on + strand, within GFF30
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 34,336 + -0.1 34,336 + -0.1 34,931 + GFF30 0.48 -0.3 34,931 + GFF30 0.48 -1.9 34,937 + GFF30 0.48 +2.3 35,183 + GFF30 0.72 -0.2 35,183 + GFF30 0.72 -1.1 35,183 + GFF30 0.72 -1.1 35,255 + GFF30 0.79 +0.3 35,255 + GFF30 0.79 -0.2 35,255 + GFF30 0.79 +0.7 35,255 + GFF30 0.79 -0.8 35,255 + GFF30 0.79 -0.3 35,255 + GFF30 0.79 -2.1 35,255 + GFF30 0.79 -1.5 35,255 + GFF30 0.79 -2.1 35,255 + GFF30 0.79 +0.1 35,255 + GFF30 0.79 -0.0 35,348 + GFF30 0.88 -0.5
Or see this region's nucleotide sequence