Strain Fitness in Variovorax sp. SCN45 around GFF2964

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2963 and GFF2964 are separated by 22 nucleotidesGFF2964 and GFF2965 are separated by 15 nucleotides GFF2963 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 393,597 to 395,081 GFF2963 GFF2964 - L-carnitine dehydratase/bile acid-inducible protein F, at 395,104 to 396,366 GFF2964 GFF2965 - Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 396,382 to 397,578 GFF2965 Position (kb) 395 396 397Strain fitness (log2 ratio) -2 -1 0 1 2 3at 394.155 kb on + strand, within GFF2963at 394.155 kb on + strand, within GFF2963at 394.156 kb on - strand, within GFF2963at 394.462 kb on + strand, within GFF2963at 394.462 kb on + strand, within GFF2963at 394.463 kb on - strand, within GFF2963at 394.463 kb on - strand, within GFF2963at 394.548 kb on + strand, within GFF2963at 394.549 kb on - strand, within GFF2963at 394.711 kb on - strand, within GFF2963at 394.731 kb on + strand, within GFF2963at 394.731 kb on + strand, within GFF2963at 394.731 kb on + strand, within GFF2963at 394.732 kb on - strand, within GFF2963at 394.732 kb on - strand, within GFF2963at 394.869 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.890 kb on + strand, within GFF2963at 394.891 kb on - strand, within GFF2963at 394.891 kb on - strand, within GFF2963at 394.891 kb on - strand, within GFF2963at 395.105 kb on + strandat 395.227 kb on - strandat 395.399 kb on + strand, within GFF2964at 395.400 kb on - strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.420 kb on + strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.421 kb on - strand, within GFF2964at 395.675 kb on + strand, within GFF2964at 395.676 kb on - strand, within GFF2964at 395.849 kb on + strand, within GFF2964at 395.850 kb on - strand, within GFF2964at 395.951 kb on + strand, within GFF2964at 396.106 kb on + strand, within GFF2964at 396.106 kb on + strand, within GFF2964at 396.107 kb on - strand, within GFF2964at 396.107 kb on - strand, within GFF2964at 396.107 kb on - strand, within GFF2964at 396.180 kb on - strand, within GFF2964at 396.180 kb on - strand, within GFF2964at 396.230 kb on + strand, within GFF2964at 396.231 kb on - strand, within GFF2964at 396.252 kb on + strandat 396.252 kb on + strandat 396.252 kb on + strandat 396.252 kb on + strandat 396.252 kb on + strandat 396.252 kb on + strandat 396.252 kb on + strandat 396.253 kb on - strandat 396.253 kb on - strandat 396.258 kb on + strandat 396.359 kb on + strandat 396.359 kb on + strandat 396.359 kb on + strandat 396.359 kb on + strandat 396.359 kb on + strandat 396.359 kb on + strandat 396.360 kb on - strandat 396.360 kb on - strandat 396.360 kb on - strandat 396.360 kb on - strandat 396.360 kb on - strandat 396.360 kb on - strandat 396.360 kb on - strandat 396.360 kb on - strandat 396.360 kb on - strandat 397.062 kb on - strand, within GFF2965at 397.062 kb on - strand, within GFF2965at 397.208 kb on + strand, within GFF2965at 397.208 kb on + strand, within GFF2965at 397.208 kb on + strand, within GFF2965at 397.208 kb on + strand, within GFF2965at 397.208 kb on + strand, within GFF2965at 397.208 kb on + strand, within GFF2965at 397.208 kb on + strand, within GFF2965at 397.209 kb on - strand, within GFF2965at 397.209 kb on - strand, within GFF2965at 397.209 kb on - strand, within GFF2965at 397.209 kb on - strand, within GFF2965at 397.211 kb on + strand, within GFF2965at 397.212 kb on - strand, within GFF2965at 397.212 kb on - strand, within GFF2965at 397.212 kb on - strand, within GFF2965

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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394,155 + GFF2963 0.38 -0.6
394,155 + GFF2963 0.38 -0.4
394,156 - GFF2963 0.38 -0.6
394,462 + GFF2963 0.58 -1.0
394,462 + GFF2963 0.58 +0.9
394,463 - GFF2963 0.58 -0.8
394,463 - GFF2963 0.58 -0.5
394,548 + GFF2963 0.64 -0.6
394,549 - GFF2963 0.64 -0.5
394,711 - GFF2963 0.75 -0.9
394,731 + GFF2963 0.76 +0.2
394,731 + GFF2963 0.76 -0.6
394,731 + GFF2963 0.76 +0.1
394,732 - GFF2963 0.76 +0.7
394,732 - GFF2963 0.76 -0.3
394,869 + GFF2963 0.86 -0.6
394,890 + GFF2963 0.87 -0.9
394,890 + GFF2963 0.87 +0.2
394,890 + GFF2963 0.87 -0.3
394,890 + GFF2963 0.87 +0.7
394,890 + GFF2963 0.87 +0.0
394,890 + GFF2963 0.87 +1.1
394,891 - GFF2963 0.87 -0.2
394,891 - GFF2963 0.87 +0.1
394,891 - GFF2963 0.87 -0.4
395,105 + -0.9
395,227 - +0.1
395,399 + GFF2964 0.23 +0.0
395,400 - GFF2964 0.23 -0.2
395,420 + GFF2964 0.25 +0.2
395,420 + GFF2964 0.25 +1.6
395,420 + GFF2964 0.25 +0.2
395,420 + GFF2964 0.25 -1.0
395,420 + GFF2964 0.25 -0.6
395,420 + GFF2964 0.25 +1.0
395,420 + GFF2964 0.25 +1.2
395,420 + GFF2964 0.25 -0.2
395,421 - GFF2964 0.25 +0.0
395,421 - GFF2964 0.25 +0.2
395,421 - GFF2964 0.25 -1.0
395,421 - GFF2964 0.25 +0.0
395,421 - GFF2964 0.25 -0.4
395,421 - GFF2964 0.25 +0.1
395,421 - GFF2964 0.25 -0.8
395,421 - GFF2964 0.25 -0.4
395,421 - GFF2964 0.25 -0.9
395,421 - GFF2964 0.25 +0.2
395,675 + GFF2964 0.45 +0.2
395,676 - GFF2964 0.45 -1.9
395,849 + GFF2964 0.59 +0.0
395,850 - GFF2964 0.59 +1.2
395,951 + GFF2964 0.67 +0.3
396,106 + GFF2964 0.79 +1.2
396,106 + GFF2964 0.79 -0.1
396,107 - GFF2964 0.79 +0.0
396,107 - GFF2964 0.79 +0.1
396,107 - GFF2964 0.79 -1.4
396,180 - GFF2964 0.85 +0.0
396,180 - GFF2964 0.85 +0.9
396,230 + GFF2964 0.89 +0.1
396,231 - GFF2964 0.89 +3.2
396,252 + -1.0
396,252 + +0.3
396,252 + -0.4
396,252 + +0.3
396,252 + -0.7
396,252 + -0.3
396,252 + -0.2
396,253 - +0.1
396,253 - -0.7
396,258 + -0.6
396,359 + +0.2
396,359 + -0.6
396,359 + +0.3
396,359 + -0.0
396,359 + -0.1
396,359 + +0.5
396,360 - -0.5
396,360 - -2.1
396,360 - -0.2
396,360 - -0.8
396,360 - -0.1
396,360 - -1.0
396,360 - -2.0
396,360 - -0.6
396,360 - -0.4
397,062 - GFF2965 0.57 -0.1
397,062 - GFF2965 0.57 -1.2
397,208 + GFF2965 0.69 -0.1
397,208 + GFF2965 0.69 -0.4
397,208 + GFF2965 0.69 +0.0
397,208 + GFF2965 0.69 -0.2
397,208 + GFF2965 0.69 +0.1
397,208 + GFF2965 0.69 +0.8
397,208 + GFF2965 0.69 +0.0
397,209 - GFF2965 0.69 +1.0
397,209 - GFF2965 0.69 +0.0
397,209 - GFF2965 0.69 -0.4
397,209 - GFF2965 0.69 -0.8
397,211 + GFF2965 0.69 -0.5
397,212 - GFF2965 0.69 -0.3
397,212 - GFF2965 0.69 +0.0
397,212 - GFF2965 0.69 -0.7

Or see this region's nucleotide sequence