Strain Fitness in Variovorax sp. SCN45 around GFF2938

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2937 and GFF2938 are separated by 114 nucleotidesGFF2938 and GFF2939 are separated by 8 nucleotidesGFF2939 and GFF2940 overlap by 4 nucleotides GFF2937 - Transcriptional regulator, LysR family, at 364,222 to 365,190 GFF2937 GFF2938 - Rieske (2Fe-2S) domain protein, at 365,305 to 365,976 GFF2938 GFF2939 - hypothetical protein, at 365,985 to 366,830 GFF2939 GFF2940 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 366,827 to 367,471 GFF2940 Position (kb) 365 366Strain fitness (log2 ratio) -1 0 1 2at 364.346 kb on + strand, within GFF2937at 364.346 kb on + strand, within GFF2937at 364.346 kb on + strand, within GFF2937at 364.346 kb on + strand, within GFF2937at 364.346 kb on + strand, within GFF2937at 364.346 kb on + strand, within GFF2937at 364.346 kb on + strand, within GFF2937at 364.346 kb on + strand, within GFF2937at 364.346 kb on + strand, within GFF2937at 364.346 kb on + strand, within GFF2937at 364.346 kb on + strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.347 kb on - strand, within GFF2937at 364.370 kb on + strand, within GFF2937at 364.370 kb on + strand, within GFF2937at 364.370 kb on + strand, within GFF2937at 364.370 kb on + strand, within GFF2937at 364.370 kb on + strand, within GFF2937at 364.370 kb on + strand, within GFF2937at 364.370 kb on + strand, within GFF2937at 364.370 kb on + strand, within GFF2937at 364.371 kb on - strand, within GFF2937at 364.371 kb on - strand, within GFF2937at 364.371 kb on - strand, within GFF2937at 364.371 kb on - strand, within GFF2937at 364.371 kb on - strand, within GFF2937at 364.661 kb on + strand, within GFF2937at 364.661 kb on + strand, within GFF2937at 364.662 kb on - strand, within GFF2937at 364.662 kb on - strand, within GFF2937at 364.662 kb on - strand, within GFF2937at 364.685 kb on + strand, within GFF2937at 364.685 kb on + strand, within GFF2937at 364.685 kb on + strand, within GFF2937at 364.686 kb on - strand, within GFF2937at 364.686 kb on - strand, within GFF2937at 364.686 kb on - strand, within GFF2937at 364.686 kb on - strand, within GFF2937at 364.686 kb on - strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.748 kb on + strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.749 kb on - strand, within GFF2937at 364.750 kb on - strand, within GFF2937at 365.260 kb on + strandat 365.261 kb on - strandat 365.261 kb on - strandat 365.261 kb on - strandat 365.261 kb on - strandat 365.518 kb on + strand, within GFF2938at 365.518 kb on + strand, within GFF2938at 365.519 kb on - strand, within GFF2938at 365.533 kb on + strand, within GFF2938at 365.533 kb on + strand, within GFF2938at 365.534 kb on - strand, within GFF2938at 366.159 kb on + strand, within GFF2939at 366.165 kb on + strand, within GFF2939at 366.166 kb on - strand, within GFF2939at 366.222 kb on + strand, within GFF2939at 366.222 kb on + strand, within GFF2939at 366.223 kb on - strand, within GFF2939at 366.223 kb on - strand, within GFF2939at 366.223 kb on - strand, within GFF2939at 366.339 kb on + strand, within GFF2939at 366.339 kb on + strand, within GFF2939at 366.340 kb on - strand, within GFF2939at 366.340 kb on - strand, within GFF2939at 366.375 kb on + strand, within GFF2939at 366.376 kb on - strand, within GFF2939at 366.376 kb on - strand, within GFF2939at 366.376 kb on - strand, within GFF2939at 366.376 kb on - strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.484 kb on - strand, within GFF2939at 366.484 kb on - strand, within GFF2939at 366.484 kb on - strand, within GFF2939at 366.484 kb on - strand, within GFF2939at 366.489 kb on + strand, within GFF2939at 366.490 kb on - strand, within GFF2939at 366.490 kb on - strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.842 kb on + strandat 366.842 kb on + strandat 366.842 kb on + strandat 366.842 kb on + strandat 366.842 kb on + strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.909 kb on - strand, within GFF2940at 366.909 kb on - strand, within GFF2940

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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364,346 + GFF2937 0.13 +0.0
364,346 + GFF2937 0.13 -0.6
364,346 + GFF2937 0.13 +0.1
364,346 + GFF2937 0.13 -0.8
364,346 + GFF2937 0.13 +0.6
364,346 + GFF2937 0.13 +0.3
364,346 + GFF2937 0.13 +0.3
364,346 + GFF2937 0.13 -0.1
364,346 + GFF2937 0.13 -0.3
364,346 + GFF2937 0.13 +0.6
364,346 + GFF2937 0.13 +0.3
364,347 - GFF2937 0.13 -0.2
364,347 - GFF2937 0.13 -0.3
364,347 - GFF2937 0.13 -0.2
364,347 - GFF2937 0.13 -1.1
364,347 - GFF2937 0.13 -0.4
364,347 - GFF2937 0.13 -0.2
364,347 - GFF2937 0.13 +0.4
364,347 - GFF2937 0.13 -1.0
364,347 - GFF2937 0.13 +1.0
364,347 - GFF2937 0.13 +0.0
364,347 - GFF2937 0.13 -0.5
364,347 - GFF2937 0.13 -1.6
364,370 + GFF2937 0.15 +1.3
364,370 + GFF2937 0.15 -1.7
364,370 + GFF2937 0.15 -1.6
364,370 + GFF2937 0.15 -1.6
364,370 + GFF2937 0.15 -1.0
364,370 + GFF2937 0.15 -0.8
364,370 + GFF2937 0.15 -0.1
364,370 + GFF2937 0.15 +0.2
364,371 - GFF2937 0.15 -0.9
364,371 - GFF2937 0.15 -0.7
364,371 - GFF2937 0.15 -0.1
364,371 - GFF2937 0.15 +0.3
364,371 - GFF2937 0.15 +1.3
364,661 + GFF2937 0.45 -0.3
364,661 + GFF2937 0.45 -1.0
364,662 - GFF2937 0.45 +0.7
364,662 - GFF2937 0.45 -0.7
364,662 - GFF2937 0.45 -1.0
364,685 + GFF2937 0.48 -0.3
364,685 + GFF2937 0.48 +0.3
364,685 + GFF2937 0.48 -1.7
364,686 - GFF2937 0.48 -0.6
364,686 - GFF2937 0.48 -0.4
364,686 - GFF2937 0.48 +0.3
364,686 - GFF2937 0.48 -1.0
364,686 - GFF2937 0.48 -0.6
364,748 + GFF2937 0.54 -0.7
364,748 + GFF2937 0.54 +0.5
364,748 + GFF2937 0.54 -0.4
364,748 + GFF2937 0.54 -0.2
364,748 + GFF2937 0.54 -1.6
364,748 + GFF2937 0.54 -0.9
364,748 + GFF2937 0.54 -0.4
364,748 + GFF2937 0.54 -0.0
364,748 + GFF2937 0.54 -0.5
364,748 + GFF2937 0.54 -0.4
364,748 + GFF2937 0.54 -0.3
364,748 + GFF2937 0.54 +0.9
364,748 + GFF2937 0.54 -0.8
364,748 + GFF2937 0.54 -0.2
364,748 + GFF2937 0.54 +0.2
364,748 + GFF2937 0.54 -1.1
364,748 + GFF2937 0.54 -0.2
364,748 + GFF2937 0.54 +0.2
364,748 + GFF2937 0.54 -0.6
364,748 + GFF2937 0.54 +0.2
364,748 + GFF2937 0.54 -0.6
364,748 + GFF2937 0.54 -0.4
364,748 + GFF2937 0.54 -0.4
364,749 - GFF2937 0.54 -0.8
364,749 - GFF2937 0.54 -0.6
364,749 - GFF2937 0.54 +0.8
364,749 - GFF2937 0.54 +0.0
364,749 - GFF2937 0.54 -0.9
364,749 - GFF2937 0.54 +0.2
364,749 - GFF2937 0.54 -0.1
364,749 - GFF2937 0.54 -0.4
364,749 - GFF2937 0.54 +0.4
364,749 - GFF2937 0.54 -1.2
364,749 - GFF2937 0.54 +0.9
364,749 - GFF2937 0.54 -0.6
364,749 - GFF2937 0.54 +0.7
364,749 - GFF2937 0.54 +0.6
364,749 - GFF2937 0.54 -1.1
364,749 - GFF2937 0.54 +0.4
364,749 - GFF2937 0.54 -0.6
364,749 - GFF2937 0.54 +0.0
364,749 - GFF2937 0.54 -0.5
364,749 - GFF2937 0.54 -1.0
364,749 - GFF2937 0.54 +0.3
364,749 - GFF2937 0.54 -1.4
364,749 - GFF2937 0.54 -0.2
364,749 - GFF2937 0.54 +0.4
364,749 - GFF2937 0.54 -0.1
364,750 - GFF2937 0.54 +0.0
365,260 + -0.7
365,261 - +0.0
365,261 - -0.7
365,261 - +1.2
365,261 - +0.7
365,518 + GFF2938 0.32 -0.4
365,518 + GFF2938 0.32 -0.7
365,519 - GFF2938 0.32 +2.2
365,533 + GFF2938 0.34 -0.1
365,533 + GFF2938 0.34 -0.4
365,534 - GFF2938 0.34 -1.1
366,159 + GFF2939 0.21 -0.5
366,165 + GFF2939 0.21 +0.9
366,166 - GFF2939 0.21 -0.3
366,222 + GFF2939 0.28 -0.1
366,222 + GFF2939 0.28 -0.4
366,223 - GFF2939 0.28 -0.3
366,223 - GFF2939 0.28 -0.3
366,223 - GFF2939 0.28 +0.1
366,339 + GFF2939 0.42 -0.1
366,339 + GFF2939 0.42 -0.5
366,340 - GFF2939 0.42 +0.8
366,340 - GFF2939 0.42 +0.4
366,375 + GFF2939 0.46 -0.2
366,376 - GFF2939 0.46 -0.4
366,376 - GFF2939 0.46 +0.2
366,376 - GFF2939 0.46 -1.0
366,376 - GFF2939 0.46 -0.2
366,483 + GFF2939 0.59 +1.6
366,483 + GFF2939 0.59 -0.7
366,483 + GFF2939 0.59 +0.0
366,483 + GFF2939 0.59 -0.2
366,483 + GFF2939 0.59 -0.7
366,483 + GFF2939 0.59 -0.5
366,484 - GFF2939 0.59 +0.6
366,484 - GFF2939 0.59 -0.1
366,484 - GFF2939 0.59 -0.4
366,484 - GFF2939 0.59 +0.3
366,489 + GFF2939 0.60 -0.2
366,490 - GFF2939 0.60 -0.3
366,490 - GFF2939 0.60 +1.6
366,522 + GFF2939 0.63 -1.1
366,522 + GFF2939 0.63 +0.1
366,522 + GFF2939 0.63 -0.6
366,522 + GFF2939 0.63 -1.0
366,523 - GFF2939 0.64 +0.1
366,523 - GFF2939 0.64 -0.4
366,523 - GFF2939 0.64 +2.2
366,523 - GFF2939 0.64 -1.6
366,523 - GFF2939 0.64 -0.2
366,842 + -0.4
366,842 + +0.3
366,842 + +1.2
366,842 + +0.1
366,842 + +0.1
366,843 - +0.6
366,843 - +1.3
366,843 - -0.4
366,843 - -1.1
366,843 - -1.5
366,843 - +0.0
366,843 - +0.2
366,843 - -0.2
366,843 - -0.9
366,843 - -0.2
366,909 - GFF2940 0.13 +1.2
366,909 - GFF2940 0.13 +0.9

Or see this region's nucleotide sequence