Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2880 and GFF2881 are separated by 19 nucleotides GFF2881 and GFF2882 are separated by 123 nucleotides
GFF2880 - Multidrug resistance transporter, Bcr/CflA family, at 305,553 to 306,788
GFF2880
GFF2881 - Putative transmembrane protein, at 306,808 to 307,935
GFF2881
GFF2882 - BUG/TctC family periplasmic protein, at 308,059 to 309,048
GFF2882
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1
2 at 305.991 kb on + strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.991 kb on + strand, within GFF2880 at 305.992 kb on - strand, within GFF2880 at 305.992 kb on - strand, within GFF2880 at 305.992 kb on - strand, within GFF2880 at 305.992 kb on - strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.111 kb on + strand, within GFF2880 at 306.112 kb on - strand, within GFF2880 at 306.112 kb on - strand, within GFF2880 at 306.112 kb on - strand, within GFF2880 at 306.112 kb on - strand, within GFF2880 at 306.184 kb on - strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.261 kb on + strand, within GFF2880 at 306.262 kb on - strand, within GFF2880 at 306.262 kb on - strand, within GFF2880 at 306.262 kb on - strand, within GFF2880 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.294 kb on + strand, within GFF2881 at 307.295 kb on - strand, within GFF2881 at 307.295 kb on - strand, within GFF2881 at 307.295 kb on - strand, within GFF2881 at 307.295 kb on - strand, within GFF2881 at 307.295 kb on - strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.468 kb on + strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.469 kb on - strand, within GFF2881 at 307.912 kb on + strand at 307.912 kb on + strand at 307.912 kb on + strand at 307.933 kb on + strand at 307.934 kb on - strand at 307.934 kb on - strand at 307.934 kb on - strand at 307.934 kb on - strand at 308.100 kb on - strand at 308.123 kb on + strand at 308.123 kb on + strand at 308.294 kb on + strand, within GFF2882 at 308.295 kb on - strand, within GFF2882 at 308.295 kb on - strand, within GFF2882 at 308.295 kb on - strand, within GFF2882 at 308.295 kb on - strand, within GFF2882 at 308.295 kb on - strand, within GFF2882 at 308.480 kb on + strand, within GFF2882 at 308.480 kb on + strand, within GFF2882 at 308.480 kb on + strand, within GFF2882 at 308.481 kb on - strand, within GFF2882 at 308.481 kb on - strand, within GFF2882 at 308.481 kb on - strand, within GFF2882 at 308.487 kb on + strand, within GFF2882 at 308.487 kb on + strand, within GFF2882 at 308.487 kb on + strand, within GFF2882 at 308.488 kb on - strand, within GFF2882 at 308.488 kb on - strand, within GFF2882 at 308.567 kb on + strand, within GFF2882 at 308.567 kb on + strand, within GFF2882 at 308.567 kb on + strand, within GFF2882 at 308.567 kb on + strand, within GFF2882 at 308.567 kb on + strand, within GFF2882 at 308.567 kb on + strand, within GFF2882 at 308.567 kb on + strand, within GFF2882 at 308.568 kb on - strand, within GFF2882 at 308.568 kb on - strand, within GFF2882 at 308.568 kb on - strand, within GFF2882 at 308.568 kb on - strand, within GFF2882 at 308.568 kb on - strand, within GFF2882 at 308.568 kb on - strand, within GFF2882 at 308.568 kb on - strand, within GFF2882 at 308.573 kb on + strand, within GFF2882 at 308.573 kb on + strand, within GFF2882
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 305,991 + GFF2880 0.35 +0.2 305,991 + GFF2880 0.35 -0.7 305,991 + GFF2880 0.35 -0.2 305,991 + GFF2880 0.35 -1.3 305,991 + GFF2880 0.35 +0.7 305,991 + GFF2880 0.35 -0.6 305,992 - GFF2880 0.36 -0.3 305,992 - GFF2880 0.36 -1.0 305,992 - GFF2880 0.36 +0.4 305,992 - GFF2880 0.36 -0.6 306,111 + GFF2880 0.45 -0.4 306,111 + GFF2880 0.45 -1.9 306,111 + GFF2880 0.45 +0.7 306,111 + GFF2880 0.45 +1.0 306,111 + GFF2880 0.45 -1.2 306,111 + GFF2880 0.45 -0.3 306,111 + GFF2880 0.45 -0.8 306,111 + GFF2880 0.45 -0.4 306,112 - GFF2880 0.45 -0.4 306,112 - GFF2880 0.45 +0.9 306,112 - GFF2880 0.45 -1.0 306,112 - GFF2880 0.45 +0.4 306,184 - GFF2880 0.51 -0.1 306,261 + GFF2880 0.57 +1.1 306,261 + GFF2880 0.57 +0.6 306,261 + GFF2880 0.57 -1.5 306,261 + GFF2880 0.57 -0.4 306,261 + GFF2880 0.57 -0.3 306,261 + GFF2880 0.57 -0.4 306,261 + GFF2880 0.57 -0.4 306,262 - GFF2880 0.57 -0.1 306,262 - GFF2880 0.57 +1.6 306,262 - GFF2880 0.57 -1.5 307,294 + GFF2881 0.43 -0.3 307,294 + GFF2881 0.43 -0.8 307,294 + GFF2881 0.43 -1.2 307,294 + GFF2881 0.43 -0.7 307,294 + GFF2881 0.43 -0.5 307,294 + GFF2881 0.43 +0.0 307,294 + GFF2881 0.43 +2.2 307,294 + GFF2881 0.43 +0.6 307,294 + GFF2881 0.43 +2.1 307,294 + GFF2881 0.43 -0.5 307,294 + GFF2881 0.43 +0.1 307,294 + GFF2881 0.43 -0.4 307,295 - GFF2881 0.43 +1.6 307,295 - GFF2881 0.43 -0.9 307,295 - GFF2881 0.43 -1.9 307,295 - GFF2881 0.43 +1.6 307,295 - GFF2881 0.43 -0.8 307,468 + GFF2881 0.59 -2.3 307,468 + GFF2881 0.59 -1.0 307,468 + GFF2881 0.59 -1.2 307,468 + GFF2881 0.59 -0.8 307,468 + GFF2881 0.59 -0.7 307,468 + GFF2881 0.59 -1.0 307,468 + GFF2881 0.59 +0.0 307,468 + GFF2881 0.59 -0.8 307,468 + GFF2881 0.59 -0.0 307,468 + GFF2881 0.59 -0.8 307,469 - GFF2881 0.59 +0.2 307,469 - GFF2881 0.59 -0.1 307,469 - GFF2881 0.59 -1.8 307,469 - GFF2881 0.59 +0.3 307,469 - GFF2881 0.59 -1.4 307,469 - GFF2881 0.59 +1.4 307,912 + -0.4 307,912 + +0.6 307,912 + -0.2 307,933 + -0.8 307,934 - -0.0 307,934 - -1.4 307,934 - +0.2 307,934 - -0.4 308,100 - -0.7 308,123 + -0.3 308,123 + +0.1 308,294 + GFF2882 0.24 -0.1 308,295 - GFF2882 0.24 +0.8 308,295 - GFF2882 0.24 +0.9 308,295 - GFF2882 0.24 -1.2 308,295 - GFF2882 0.24 -1.1 308,295 - GFF2882 0.24 +0.2 308,480 + GFF2882 0.43 -0.0 308,480 + GFF2882 0.43 -0.7 308,480 + GFF2882 0.43 +0.2 308,481 - GFF2882 0.43 -1.0 308,481 - GFF2882 0.43 +0.3 308,481 - GFF2882 0.43 -0.5 308,487 + GFF2882 0.43 -0.1 308,487 + GFF2882 0.43 -2.4 308,487 + GFF2882 0.43 -1.4 308,488 - GFF2882 0.43 -0.6 308,488 - GFF2882 0.43 -1.0 308,567 + GFF2882 0.51 -1.6 308,567 + GFF2882 0.51 -0.2 308,567 + GFF2882 0.51 +0.1 308,567 + GFF2882 0.51 -0.9 308,567 + GFF2882 0.51 +0.5 308,567 + GFF2882 0.51 -0.0 308,567 + GFF2882 0.51 -0.6 308,568 - GFF2882 0.51 -0.2 308,568 - GFF2882 0.51 -1.4 308,568 - GFF2882 0.51 -0.7 308,568 - GFF2882 0.51 -0.9 308,568 - GFF2882 0.51 -0.3 308,568 - GFF2882 0.51 -0.3 308,568 - GFF2882 0.51 +0.2 308,573 + GFF2882 0.52 -0.2 308,573 + GFF2882 0.52 +0.3
Or see this region's nucleotide sequence