Strain Fitness in Variovorax sp. SCN45 around GFF2877

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2875 and GFF2876 are separated by 55 nucleotidesGFF2876 and GFF2877 are separated by 409 nucleotidesGFF2877 and GFF2878 are separated by 64 nucleotides GFF2875 - Granule-associated protein, at 298,375 to 298,926 GFF2875 GFF2876 - no description, at 298,982 to 299,353 GFF2876 GFF2877 - Ribonuclease BN, at 299,763 to 300,710 GFF2877 GFF2878 - DNA primase DnaG, at 300,775 to 302,820 GFF2878 Position (kb) 299 300 301Strain fitness (log2 ratio) -2 -1 0 1 2at 298.924 kb on + strandat 298.925 kb on - strandat 298.925 kb on - strandat 299.056 kb on + strand, within GFF2876at 299.056 kb on + strand, within GFF2876at 299.056 kb on + strand, within GFF2876at 299.056 kb on + strand, within GFF2876at 299.056 kb on + strand, within GFF2876at 299.057 kb on - strand, within GFF2876at 299.080 kb on + strand, within GFF2876at 299.080 kb on + strand, within GFF2876at 299.081 kb on - strand, within GFF2876at 299.501 kb on + strandat 299.501 kb on + strandat 299.501 kb on + strandat 299.502 kb on - strandat 299.528 kb on + strandat 299.528 kb on + strandat 299.528 kb on + strandat 299.528 kb on + strandat 299.528 kb on + strandat 299.528 kb on + strandat 299.529 kb on - strandat 299.723 kb on + strandat 299.723 kb on + strandat 299.723 kb on + strandat 299.723 kb on + strandat 299.724 kb on - strandat 299.724 kb on - strandat 299.724 kb on - strandat 299.724 kb on - strandat 299.724 kb on - strandat 299.846 kb on + strandat 299.863 kb on + strand, within GFF2877at 299.864 kb on - strand, within GFF2877at 299.864 kb on - strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.953 kb on + strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.954 kb on - strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.986 kb on + strand, within GFF2877at 299.987 kb on - strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.088 kb on + strand, within GFF2877at 300.089 kb on - strand, within GFF2877at 300.089 kb on - strand, within GFF2877at 300.089 kb on - strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.133 kb on + strand, within GFF2877at 300.134 kb on - strand, within GFF2877at 300.134 kb on - strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.265 kb on + strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.266 kb on - strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.271 kb on + strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.272 kb on - strand, within GFF2877at 300.273 kb on - strand, within GFF2877at 300.487 kb on + strand, within GFF2877at 300.487 kb on + strand, within GFF2877at 300.488 kb on - strand, within GFF2877at 300.488 kb on - strand, within GFF2877at 300.583 kb on + strand, within GFF2877at 300.583 kb on + strand, within GFF2877at 300.583 kb on + strand, within GFF2877at 300.584 kb on - strand, within GFF2877at 300.584 kb on - strand, within GFF2877at 300.584 kb on - strand, within GFF2877at 300.584 kb on - strand, within GFF2877at 300.584 kb on - strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.586 kb on + strand, within GFF2877at 300.587 kb on - strand, within GFF2877at 300.587 kb on - strand, within GFF2877at 300.587 kb on - strand, within GFF2877at 300.587 kb on - strand, within GFF2877at 300.649 kb on - strandat 300.649 kb on - strandat 300.649 kb on - strandat 300.734 kb on + strandat 300.734 kb on + strandat 300.734 kb on + strandat 300.734 kb on + strandat 300.735 kb on - strandat 300.735 kb on - strandat 300.735 kb on - strandat 300.769 kb on + strandat 300.769 kb on + strandat 300.770 kb on - strandat 300.790 kb on + strandat 300.790 kb on + strandat 300.790 kb on + strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strandat 300.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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298,924 + -0.7
298,925 - +0.2
298,925 - -1.0
299,056 + GFF2876 0.20 -0.5
299,056 + GFF2876 0.20 +0.4
299,056 + GFF2876 0.20 +0.3
299,056 + GFF2876 0.20 -0.2
299,056 + GFF2876 0.20 -0.3
299,057 - GFF2876 0.20 -0.5
299,080 + GFF2876 0.26 +0.1
299,080 + GFF2876 0.26 +0.3
299,081 - GFF2876 0.27 +0.1
299,501 + +0.6
299,501 + -0.8
299,501 + -1.1
299,502 - +0.2
299,528 + +0.2
299,528 + -0.8
299,528 + +0.4
299,528 + -0.7
299,528 + -0.2
299,528 + -0.4
299,529 - -0.8
299,723 + -0.7
299,723 + -1.1
299,723 + -0.3
299,723 + -0.5
299,724 - +0.3
299,724 - -0.2
299,724 - -1.4
299,724 - +0.2
299,724 - -0.5
299,846 + -0.6
299,863 + GFF2877 0.11 +0.2
299,864 - GFF2877 0.11 -0.8
299,864 - GFF2877 0.11 -0.4
299,953 + GFF2877 0.20 -1.6
299,953 + GFF2877 0.20 -0.3
299,953 + GFF2877 0.20 -0.1
299,953 + GFF2877 0.20 +1.2
299,954 - GFF2877 0.20 -1.0
299,954 - GFF2877 0.20 -0.9
299,954 - GFF2877 0.20 -0.3
299,954 - GFF2877 0.20 -0.4
299,986 + GFF2877 0.24 +2.2
299,986 + GFF2877 0.24 +0.5
299,986 + GFF2877 0.24 -0.8
299,986 + GFF2877 0.24 +0.2
299,986 + GFF2877 0.24 +0.3
299,986 + GFF2877 0.24 -1.8
299,987 - GFF2877 0.24 +1.3
300,088 + GFF2877 0.34 +0.1
300,088 + GFF2877 0.34 -0.0
300,088 + GFF2877 0.34 +0.3
300,088 + GFF2877 0.34 +1.2
300,089 - GFF2877 0.34 +0.2
300,089 - GFF2877 0.34 -0.5
300,089 - GFF2877 0.34 +1.0
300,133 + GFF2877 0.39 -0.1
300,133 + GFF2877 0.39 +0.6
300,133 + GFF2877 0.39 -0.4
300,133 + GFF2877 0.39 +0.6
300,134 - GFF2877 0.39 +0.4
300,134 - GFF2877 0.39 +0.6
300,265 + GFF2877 0.53 -0.3
300,265 + GFF2877 0.53 +0.3
300,265 + GFF2877 0.53 -0.2
300,265 + GFF2877 0.53 -0.4
300,265 + GFF2877 0.53 -0.2
300,265 + GFF2877 0.53 +0.3
300,265 + GFF2877 0.53 -0.3
300,265 + GFF2877 0.53 -0.7
300,265 + GFF2877 0.53 -0.8
300,265 + GFF2877 0.53 +0.6
300,265 + GFF2877 0.53 -0.5
300,265 + GFF2877 0.53 +1.6
300,265 + GFF2877 0.53 -0.5
300,265 + GFF2877 0.53 -0.0
300,265 + GFF2877 0.53 -0.8
300,265 + GFF2877 0.53 +0.5
300,265 + GFF2877 0.53 -0.4
300,265 + GFF2877 0.53 -0.8
300,265 + GFF2877 0.53 -0.1
300,265 + GFF2877 0.53 +1.2
300,265 + GFF2877 0.53 +0.2
300,265 + GFF2877 0.53 -0.0
300,266 - GFF2877 0.53 -0.3
300,266 - GFF2877 0.53 -0.1
300,266 - GFF2877 0.53 -2.1
300,266 - GFF2877 0.53 -2.5
300,266 - GFF2877 0.53 -2.2
300,266 - GFF2877 0.53 +0.2
300,266 - GFF2877 0.53 -0.4
300,266 - GFF2877 0.53 -0.1
300,266 - GFF2877 0.53 -0.5
300,266 - GFF2877 0.53 +1.2
300,266 - GFF2877 0.53 -0.4
300,266 - GFF2877 0.53 -0.2
300,266 - GFF2877 0.53 -0.4
300,266 - GFF2877 0.53 -0.1
300,266 - GFF2877 0.53 +0.0
300,266 - GFF2877 0.53 -2.0
300,266 - GFF2877 0.53 +0.1
300,266 - GFF2877 0.53 -0.1
300,266 - GFF2877 0.53 +0.3
300,266 - GFF2877 0.53 -1.3
300,271 + GFF2877 0.54 +0.3
300,271 + GFF2877 0.54 +0.0
300,271 + GFF2877 0.54 +0.6
300,271 + GFF2877 0.54 -0.3
300,271 + GFF2877 0.54 -0.4
300,271 + GFF2877 0.54 +0.6
300,271 + GFF2877 0.54 +0.9
300,271 + GFF2877 0.54 -0.2
300,271 + GFF2877 0.54 -0.8
300,271 + GFF2877 0.54 +0.5
300,271 + GFF2877 0.54 +0.5
300,271 + GFF2877 0.54 -0.9
300,271 + GFF2877 0.54 -1.4
300,271 + GFF2877 0.54 -0.6
300,271 + GFF2877 0.54 +0.2
300,271 + GFF2877 0.54 +0.6
300,271 + GFF2877 0.54 -1.6
300,271 + GFF2877 0.54 -0.3
300,271 + GFF2877 0.54 +0.1
300,271 + GFF2877 0.54 -0.8
300,271 + GFF2877 0.54 -0.4
300,271 + GFF2877 0.54 -0.2
300,271 + GFF2877 0.54 +0.6
300,272 - GFF2877 0.54 -1.0
300,272 - GFF2877 0.54 +0.3
300,272 - GFF2877 0.54 +0.6
300,272 - GFF2877 0.54 -0.5
300,272 - GFF2877 0.54 +0.5
300,272 - GFF2877 0.54 -0.5
300,272 - GFF2877 0.54 +0.0
300,272 - GFF2877 0.54 -0.9
300,272 - GFF2877 0.54 -0.8
300,272 - GFF2877 0.54 +0.1
300,272 - GFF2877 0.54 -0.9
300,272 - GFF2877 0.54 +0.4
300,272 - GFF2877 0.54 -0.0
300,272 - GFF2877 0.54 -0.6
300,273 - GFF2877 0.54 +0.4
300,487 + GFF2877 0.76 -1.5
300,487 + GFF2877 0.76 +0.2
300,488 - GFF2877 0.76 +0.6
300,488 - GFF2877 0.76 +0.2
300,583 + GFF2877 0.86 -0.0
300,583 + GFF2877 0.86 -0.4
300,583 + GFF2877 0.86 -0.9
300,584 - GFF2877 0.87 -0.8
300,584 - GFF2877 0.87 -1.0
300,584 - GFF2877 0.87 -0.3
300,584 - GFF2877 0.87 -0.1
300,584 - GFF2877 0.87 -0.0
300,586 + GFF2877 0.87 -0.2
300,586 + GFF2877 0.87 +0.3
300,586 + GFF2877 0.87 +0.1
300,586 + GFF2877 0.87 +0.8
300,586 + GFF2877 0.87 +1.2
300,586 + GFF2877 0.87 +1.9
300,586 + GFF2877 0.87 -0.6
300,586 + GFF2877 0.87 -0.9
300,586 + GFF2877 0.87 +0.4
300,587 - GFF2877 0.87 -1.4
300,587 - GFF2877 0.87 -1.0
300,587 - GFF2877 0.87 -0.7
300,587 - GFF2877 0.87 +0.1
300,649 - +0.2
300,649 - +0.3
300,649 - -0.2
300,734 + +0.2
300,734 + -2.2
300,734 + -0.4
300,734 + +1.7
300,735 - -0.4
300,735 - +1.0
300,735 - -0.4
300,769 + +0.1
300,769 + +0.2
300,770 - +0.1
300,790 + -0.2
300,790 + +0.3
300,790 + -0.8
300,791 - -1.1
300,791 - -0.6
300,791 - -1.6
300,791 - -0.0
300,791 - -0.4
300,791 - -0.4
300,791 - +0.2
300,791 - +0.2
300,791 - -0.4

Or see this region's nucleotide sequence