Strain Fitness in Variovorax sp. SCN45 around GFF280

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF279 and GFF280 are separated by 144 nucleotidesGFF280 and GFF281 are separated by 172 nucleotides GFF279 - Uncharacterized MFS-type transporter, at 313,188 to 314,573 GFF279 GFF280 - BUG/TctC family periplasmic protein, at 314,718 to 315,692 GFF280 GFF281 - Outer membrane porin protein 32 precursor, at 315,865 to 316,884 GFF281 Position (kb) 314 315 316Strain fitness (log2 ratio) -2 -1 0 1at 313.789 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.790 kb on - strand, within GFF279at 313.790 kb on - strand, within GFF279at 313.790 kb on - strand, within GFF279at 313.854 kb on + strand, within GFF279at 313.855 kb on + strand, within GFF279at 313.855 kb on + strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 314.422 kb on + strand, within GFF279at 314.422 kb on + strand, within GFF279at 314.423 kb on - strand, within GFF279at 314.625 kb on - strandat 314.635 kb on + strandat 314.659 kb on - strandat 314.668 kb on + strandat 314.684 kb on + strandat 314.685 kb on - strandat 314.685 kb on - strandat 314.685 kb on - strandat 314.685 kb on - strandat 314.685 kb on - strandat 314.698 kb on + strandat 314.699 kb on - strandat 314.699 kb on - strandat 314.702 kb on + strandat 314.702 kb on + strandat 314.702 kb on + strandat 314.702 kb on + strandat 314.702 kb on + strandat 314.703 kb on - strandat 314.703 kb on - strandat 314.703 kb on - strandat 314.703 kb on - strandat 314.877 kb on + strand, within GFF280at 314.877 kb on + strand, within GFF280at 314.877 kb on + strand, within GFF280at 314.878 kb on - strand, within GFF280at 314.988 kb on + strand, within GFF280at 315.054 kb on + strand, within GFF280at 315.054 kb on + strand, within GFF280at 315.054 kb on + strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.055 kb on - strand, within GFF280at 315.201 kb on + strand, within GFF280at 315.201 kb on + strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.202 kb on - strand, within GFF280at 315.279 kb on + strand, within GFF280at 315.279 kb on + strand, within GFF280at 315.280 kb on - strand, within GFF280at 315.280 kb on - strand, within GFF280at 315.280 kb on - strand, within GFF280at 315.845 kb on - strandat 315.845 kb on - strandat 316.207 kb on + strand, within GFF281at 316.208 kb on - strand, within GFF281at 316.348 kb on + strand, within GFF281at 316.348 kb on + strand, within GFF281at 316.349 kb on - strand, within GFF281at 316.379 kb on - strand, within GFF281at 316.426 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.447 kb on + strand, within GFF281at 316.448 kb on - strand, within GFF281at 316.480 kb on + strand, within GFF281at 316.480 kb on + strand, within GFF281at 316.481 kb on - strand, within GFF281at 316.481 kb on - strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.537 kb on + strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.538 kb on - strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.561 kb on + strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.562 kb on - strand, within GFF281at 316.570 kb on + strand, within GFF281at 316.570 kb on + strand, within GFF281at 316.571 kb on - strand, within GFF281at 316.571 kb on - strand, within GFF281at 316.571 kb on - strand, within GFF281

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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313,789 + GFF279 0.43 +0.4
313,789 + GFF279 0.43 -1.7
313,789 + GFF279 0.43 -0.2
313,789 + GFF279 0.43 +0.3
313,790 - GFF279 0.43 -0.8
313,790 - GFF279 0.43 -0.2
313,790 - GFF279 0.43 -0.5
313,854 + GFF279 0.48 -2.0
313,855 + GFF279 0.48 +0.5
313,855 + GFF279 0.48 +0.4
313,856 - GFF279 0.48 +0.2
313,856 - GFF279 0.48 +1.5
313,856 - GFF279 0.48 -0.2
313,856 - GFF279 0.48 +1.3
313,856 - GFF279 0.48 +0.3
314,422 + GFF279 0.89 -0.3
314,422 + GFF279 0.89 -0.3
314,423 - GFF279 0.89 +1.3
314,625 - -0.6
314,635 + +0.1
314,659 - -1.0
314,668 + -1.5
314,684 + +0.1
314,685 - -0.2
314,685 - +0.0
314,685 - -0.6
314,685 - +0.5
314,685 - -0.5
314,698 + -0.1
314,699 - -0.7
314,699 - -0.2
314,702 + -0.6
314,702 + +0.3
314,702 + +0.5
314,702 + -0.6
314,702 + -0.6
314,703 - -0.3
314,703 - -0.0
314,703 - -0.4
314,703 - -0.7
314,877 + GFF280 0.16 -0.5
314,877 + GFF280 0.16 +0.3
314,877 + GFF280 0.16 -0.3
314,878 - GFF280 0.16 +1.3
314,988 + GFF280 0.28 +1.1
315,054 + GFF280 0.34 -0.3
315,054 + GFF280 0.34 +1.1
315,054 + GFF280 0.34 +1.6
315,055 - GFF280 0.35 +0.7
315,055 - GFF280 0.35 +0.3
315,055 - GFF280 0.35 -0.9
315,055 - GFF280 0.35 +1.1
315,201 + GFF280 0.50 -1.7
315,201 + GFF280 0.50 -2.0
315,202 - GFF280 0.50 -0.0
315,202 - GFF280 0.50 -0.3
315,202 - GFF280 0.50 -0.5
315,202 - GFF280 0.50 +0.4
315,279 + GFF280 0.58 -0.2
315,279 + GFF280 0.58 -0.2
315,280 - GFF280 0.58 +0.1
315,280 - GFF280 0.58 +0.3
315,280 - GFF280 0.58 +0.0
315,845 - -0.6
315,845 - -0.7
316,207 + GFF281 0.34 +0.3
316,208 - GFF281 0.34 +1.0
316,348 + GFF281 0.47 -0.2
316,348 + GFF281 0.47 -0.7
316,349 - GFF281 0.47 -0.7
316,379 - GFF281 0.50 -0.2
316,426 + GFF281 0.55 +0.5
316,447 + GFF281 0.57 +0.6
316,447 + GFF281 0.57 -2.6
316,447 + GFF281 0.57 -0.2
316,447 + GFF281 0.57 +0.6
316,448 - GFF281 0.57 +0.9
316,480 + GFF281 0.60 +0.3
316,480 + GFF281 0.60 +0.3
316,481 - GFF281 0.60 +0.7
316,481 - GFF281 0.60 -0.5
316,537 + GFF281 0.66 -0.5
316,537 + GFF281 0.66 -0.9
316,537 + GFF281 0.66 +0.2
316,537 + GFF281 0.66 -0.4
316,538 - GFF281 0.66 +0.3
316,538 - GFF281 0.66 -0.6
316,538 - GFF281 0.66 -0.4
316,538 - GFF281 0.66 -1.7
316,561 + GFF281 0.68 -0.3
316,561 + GFF281 0.68 +0.7
316,561 + GFF281 0.68 -1.0
316,561 + GFF281 0.68 -1.0
316,561 + GFF281 0.68 +0.2
316,562 - GFF281 0.68 -0.8
316,562 - GFF281 0.68 -0.3
316,562 - GFF281 0.68 -0.3
316,562 - GFF281 0.68 +1.3
316,570 + GFF281 0.69 -0.5
316,570 + GFF281 0.69 +0.1
316,571 - GFF281 0.69 +1.0
316,571 - GFF281 0.69 +0.7
316,571 - GFF281 0.69 -0.3

Or see this region's nucleotide sequence