Strain Fitness in Variovorax sp. SCN45 around GFF2797

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2796 and GFF2797 overlap by 14 nucleotidesGFF2797 and GFF2798 are separated by 8 nucleotides GFF2796 - Dihydrodipicolinate synthase family protein PP2639, at 225,810 to 226,706 GFF2796 GFF2797 - Molybdopterin synthase sulfur carrier subunit, at 226,693 to 226,944 GFF2797 GFF2798 - Molybdopterin molybdenumtransferase (EC 2.10.1.1), at 226,953 to 228,191 GFF2798 Position (kb) 226 227Strain fitness (log2 ratio) -2 -1 0 1at 225.834 kb on - strandat 225.834 kb on - strandat 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.245 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.379 kb on - strand, within GFF2796at 226.379 kb on - strand, within GFF2796at 226.817 kb on + strand, within GFF2797at 226.817 kb on + strand, within GFF2797at 226.818 kb on - strand, within GFF2797at 226.925 kb on + strandat 226.925 kb on + strandat 227.073 kb on + strandat 227.199 kb on - strand, within GFF2798at 227.199 kb on - strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.578 kb on + strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.579 kb on - strand, within GFF2798at 227.861 kb on + strand, within GFF2798at 227.861 kb on + strand, within GFF2798at 227.862 kb on - strand, within GFF2798at 227.862 kb on - strand, within GFF2798at 227.862 kb on - strand, within GFF2798at 227.918 kb on + strand, within GFF2798at 227.918 kb on + strand, within GFF2798at 227.919 kb on - strand, within GFF2798at 227.919 kb on - strand, within GFF2798at 227.919 kb on - strand, within GFF2798

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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225,834 - +0.3
225,834 - +0.6
226,155 + GFF2796 0.38 -0.4
226,155 + GFF2796 0.38 +0.1
226,155 + GFF2796 0.38 +0.1
226,155 + GFF2796 0.38 +0.5
226,155 + GFF2796 0.38 -0.6
226,155 + GFF2796 0.38 +0.3
226,156 - GFF2796 0.39 -0.4
226,156 - GFF2796 0.39 -1.7
226,156 - GFF2796 0.39 -0.3
226,156 - GFF2796 0.39 -0.8
226,156 - GFF2796 0.39 -1.1
226,156 - GFF2796 0.39 -0.8
226,156 - GFF2796 0.39 -0.5
226,156 - GFF2796 0.39 -2.0
226,156 - GFF2796 0.39 -0.7
226,233 + GFF2796 0.47 +0.3
226,233 + GFF2796 0.47 -0.4
226,233 + GFF2796 0.47 -0.3
226,234 - GFF2796 0.47 -1.0
226,234 - GFF2796 0.47 -1.2
226,234 - GFF2796 0.47 +0.4
226,245 + GFF2796 0.48 +1.0
226,378 + GFF2796 0.63 +0.8
226,378 + GFF2796 0.63 +0.1
226,378 + GFF2796 0.63 -0.3
226,379 - GFF2796 0.63 -1.4
226,379 - GFF2796 0.63 -0.1
226,817 + GFF2797 0.49 -0.0
226,817 + GFF2797 0.49 +0.7
226,818 - GFF2797 0.50 +0.3
226,925 + +0.6
226,925 + +0.3
227,073 + +0.2
227,199 - GFF2798 0.20 +0.7
227,199 - GFF2798 0.20 +0.8
227,578 + GFF2798 0.50 -0.2
227,578 + GFF2798 0.50 -0.2
227,578 + GFF2798 0.50 -1.0
227,578 + GFF2798 0.50 +0.3
227,578 + GFF2798 0.50 -0.2
227,578 + GFF2798 0.50 -0.4
227,578 + GFF2798 0.50 -0.2
227,578 + GFF2798 0.50 -1.2
227,578 + GFF2798 0.50 -0.9
227,578 + GFF2798 0.50 -0.4
227,578 + GFF2798 0.50 -0.1
227,578 + GFF2798 0.50 -0.5
227,578 + GFF2798 0.50 -0.4
227,578 + GFF2798 0.50 -0.4
227,579 - GFF2798 0.51 +0.7
227,579 - GFF2798 0.51 +0.1
227,579 - GFF2798 0.51 -0.7
227,579 - GFF2798 0.51 -0.4
227,579 - GFF2798 0.51 -0.1
227,579 - GFF2798 0.51 +0.0
227,861 + GFF2798 0.73 -0.3
227,861 + GFF2798 0.73 +1.6
227,862 - GFF2798 0.73 -1.0
227,862 - GFF2798 0.73 -1.1
227,862 - GFF2798 0.73 -0.9
227,918 + GFF2798 0.78 -1.1
227,918 + GFF2798 0.78 -0.4
227,919 - GFF2798 0.78 +0.4
227,919 - GFF2798 0.78 +1.2
227,919 - GFF2798 0.78 -1.0

Or see this region's nucleotide sequence