Strain Fitness in Variovorax sp. SCN45 around GFF2723

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2722 and GFF2723 are separated by 128 nucleotidesGFF2723 and GFF2724 are separated by 51 nucleotides GFF2722 - Transcriptional regulator, LysR family, at 154,638 to 155,594 GFF2722 GFF2723 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit, at 155,723 to 156,556 GFF2723 GFF2724 - FIG01220323: hypothetical protein, at 156,608 to 157,678 GFF2724 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1at 154.762 kb on + strand, within GFF2722at 154.762 kb on + strand, within GFF2722at 154.762 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.765 kb on + strand, within GFF2722at 154.766 kb on - strand, within GFF2722at 154.766 kb on - strand, within GFF2722at 154.766 kb on - strand, within GFF2722at 154.766 kb on - strand, within GFF2722at 154.766 kb on - strand, within GFF2722at 154.766 kb on - strand, within GFF2722at 154.766 kb on - strand, within GFF2722at 154.766 kb on - strand, within GFF2722at 154.766 kb on - strand, within GFF2722at 154.766 kb on - strand, within GFF2722at 154.969 kb on + strand, within GFF2722at 154.969 kb on + strand, within GFF2722at 154.969 kb on + strand, within GFF2722at 154.969 kb on + strand, within GFF2722at 154.969 kb on + strand, within GFF2722at 154.970 kb on - strand, within GFF2722at 154.970 kb on - strand, within GFF2722at 154.970 kb on - strand, within GFF2722at 155.005 kb on + strand, within GFF2722at 155.068 kb on + strand, within GFF2722at 155.068 kb on + strand, within GFF2722at 155.068 kb on + strand, within GFF2722at 155.069 kb on - strand, within GFF2722at 155.227 kb on + strand, within GFF2722at 155.573 kb on + strandat 155.573 kb on + strandat 155.573 kb on + strandat 155.573 kb on + strandat 155.573 kb on + strandat 155.573 kb on + strandat 155.574 kb on - strandat 155.574 kb on - strandat 155.574 kb on - strandat 155.574 kb on - strandat 155.574 kb on - strandat 155.679 kb on + strandat 155.679 kb on + strandat 155.679 kb on + strandat 155.679 kb on + strandat 155.679 kb on + strandat 155.680 kb on - strandat 155.680 kb on - strandat 155.680 kb on - strandat 155.680 kb on - strandat 155.680 kb on - strandat 155.680 kb on - strandat 155.680 kb on - strandat 155.680 kb on - strandat 155.680 kb on - strandat 156.180 kb on - strand, within GFF2723at 156.180 kb on - strand, within GFF2723at 156.180 kb on - strand, within GFF2723at 156.180 kb on - strand, within GFF2723at 156.321 kb on + strand, within GFF2723at 156.321 kb on + strand, within GFF2723at 156.321 kb on + strand, within GFF2723at 156.322 kb on - strand, within GFF2723at 156.322 kb on - strand, within GFF2723at 156.322 kb on - strand, within GFF2723at 156.322 kb on - strand, within GFF2723at 156.322 kb on - strand, within GFF2723at 156.485 kb on + strandat 156.485 kb on + strandat 156.485 kb on + strandat 156.485 kb on + strandat 156.485 kb on + strandat 156.486 kb on - strandat 156.486 kb on - strandat 156.486 kb on - strandat 156.486 kb on - strandat 156.686 kb on + strandat 156.686 kb on + strandat 156.686 kb on + strandat 156.686 kb on + strandat 156.687 kb on - strandat 156.687 kb on - strandat 156.687 kb on - strandat 156.687 kb on - strandat 156.713 kb on + strandat 156.713 kb on + strandat 156.714 kb on - strandat 156.714 kb on - strandat 156.770 kb on + strand, within GFF2724at 156.770 kb on + strand, within GFF2724at 156.771 kb on - strand, within GFF2724at 156.771 kb on - strand, within GFF2724at 156.771 kb on - strand, within GFF2724at 156.806 kb on + strand, within GFF2724at 156.807 kb on - strand, within GFF2724at 156.821 kb on + strand, within GFF2724at 156.821 kb on + strand, within GFF2724at 156.822 kb on - strand, within GFF2724at 156.822 kb on - strand, within GFF2724at 156.839 kb on + strand, within GFF2724at 156.840 kb on - strand, within GFF2724at 156.899 kb on + strand, within GFF2724at 156.900 kb on - strand, within GFF2724at 156.926 kb on + strand, within GFF2724at 156.926 kb on + strand, within GFF2724at 156.926 kb on + strand, within GFF2724at 156.926 kb on + strand, within GFF2724at 156.927 kb on - strand, within GFF2724at 156.927 kb on - strand, within GFF2724at 156.927 kb on - strand, within GFF2724at 156.927 kb on - strand, within GFF2724at 156.927 kb on - strand, within GFF2724at 156.927 kb on - strand, within GFF2724at 156.927 kb on - strand, within GFF2724at 156.929 kb on - strand, within GFF2724at 156.953 kb on + strand, within GFF2724at 156.953 kb on + strand, within GFF2724at 156.954 kb on - strand, within GFF2724at 156.983 kb on + strand, within GFF2724at 156.983 kb on + strand, within GFF2724at 156.983 kb on + strand, within GFF2724at 156.984 kb on - strand, within GFF2724at 156.984 kb on - strand, within GFF2724at 156.984 kb on - strand, within GFF2724at 156.984 kb on - strand, within GFF2724at 157.046 kb on + strand, within GFF2724at 157.087 kb on - strand, within GFF2724at 157.087 kb on - strand, within GFF2724at 157.193 kb on + strand, within GFF2724at 157.193 kb on + strand, within GFF2724at 157.193 kb on + strand, within GFF2724at 157.194 kb on - strand, within GFF2724at 157.194 kb on - strand, within GFF2724at 157.283 kb on + strand, within GFF2724at 157.283 kb on + strand, within GFF2724at 157.284 kb on - strand, within GFF2724at 157.358 kb on + strand, within GFF2724at 157.358 kb on + strand, within GFF2724at 157.358 kb on + strand, within GFF2724at 157.359 kb on - strand, within GFF2724at 157.361 kb on + strand, within GFF2724at 157.508 kb on + strand, within GFF2724at 157.508 kb on + strand, within GFF2724at 157.508 kb on + strand, within GFF2724at 157.508 kb on + strand, within GFF2724at 157.508 kb on + strand, within GFF2724at 157.508 kb on + strand, within GFF2724at 157.508 kb on + strand, within GFF2724at 157.509 kb on - strand, within GFF2724at 157.509 kb on - strand, within GFF2724at 157.509 kb on - strand, within GFF2724at 157.509 kb on - strand, within GFF2724at 157.509 kb on - strand, within GFF2724

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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154,762 + GFF2722 0.13 +0.4
154,762 + GFF2722 0.13 -0.8
154,762 + GFF2722 0.13 -0.3
154,765 + GFF2722 0.13 -0.0
154,765 + GFF2722 0.13 -0.2
154,765 + GFF2722 0.13 +1.6
154,765 + GFF2722 0.13 -0.4
154,765 + GFF2722 0.13 -0.3
154,765 + GFF2722 0.13 -0.0
154,765 + GFF2722 0.13 -0.0
154,765 + GFF2722 0.13 -0.6
154,765 + GFF2722 0.13 -0.3
154,765 + GFF2722 0.13 -0.3
154,765 + GFF2722 0.13 -0.4
154,766 - GFF2722 0.13 +0.4
154,766 - GFF2722 0.13 -0.7
154,766 - GFF2722 0.13 -0.0
154,766 - GFF2722 0.13 -0.3
154,766 - GFF2722 0.13 -0.2
154,766 - GFF2722 0.13 +1.1
154,766 - GFF2722 0.13 -0.8
154,766 - GFF2722 0.13 -0.1
154,766 - GFF2722 0.13 -0.2
154,766 - GFF2722 0.13 +0.5
154,969 + GFF2722 0.35 -0.3
154,969 + GFF2722 0.35 -0.1
154,969 + GFF2722 0.35 -0.2
154,969 + GFF2722 0.35 +0.5
154,969 + GFF2722 0.35 -0.4
154,970 - GFF2722 0.35 -0.4
154,970 - GFF2722 0.35 +0.2
154,970 - GFF2722 0.35 -0.0
155,005 + GFF2722 0.38 +0.6
155,068 + GFF2722 0.45 +0.2
155,068 + GFF2722 0.45 +1.6
155,068 + GFF2722 0.45 +0.6
155,069 - GFF2722 0.45 -1.4
155,227 + GFF2722 0.62 -0.3
155,573 + -0.7
155,573 + +0.6
155,573 + +0.2
155,573 + +0.5
155,573 + -0.3
155,573 + -0.5
155,574 - -0.4
155,574 - +0.2
155,574 - -0.4
155,574 - +1.6
155,574 - -1.7
155,679 + -1.4
155,679 + -0.3
155,679 + -0.4
155,679 + -0.3
155,679 + +0.2
155,680 - -0.4
155,680 - -0.8
155,680 - -1.4
155,680 - -0.4
155,680 - -0.7
155,680 - -0.3
155,680 - -0.7
155,680 - -0.5
155,680 - +0.1
156,180 - GFF2723 0.55 -0.4
156,180 - GFF2723 0.55 -1.3
156,180 - GFF2723 0.55 -0.3
156,180 - GFF2723 0.55 +0.1
156,321 + GFF2723 0.72 +1.0
156,321 + GFF2723 0.72 +0.1
156,321 + GFF2723 0.72 +0.1
156,322 - GFF2723 0.72 +0.3
156,322 - GFF2723 0.72 +0.3
156,322 - GFF2723 0.72 +0.9
156,322 - GFF2723 0.72 -0.4
156,322 - GFF2723 0.72 +1.4
156,485 + +0.1
156,485 + -0.0
156,485 + -1.4
156,485 + -0.9
156,485 + +0.1
156,486 - +0.6
156,486 - +0.1
156,486 - -0.4
156,486 - -0.5
156,686 + +0.1
156,686 + -0.7
156,686 + -0.6
156,686 + -0.8
156,687 - -0.2
156,687 - -0.1
156,687 - +0.1
156,687 - -0.0
156,713 + -0.0
156,713 + -1.1
156,714 - -1.3
156,714 - -1.2
156,770 + GFF2724 0.15 +0.8
156,770 + GFF2724 0.15 +0.1
156,771 - GFF2724 0.15 -0.5
156,771 - GFF2724 0.15 -0.4
156,771 - GFF2724 0.15 -0.1
156,806 + GFF2724 0.18 -0.6
156,807 - GFF2724 0.19 -0.5
156,821 + GFF2724 0.20 -0.5
156,821 + GFF2724 0.20 -0.4
156,822 - GFF2724 0.20 -0.2
156,822 - GFF2724 0.20 +0.4
156,839 + GFF2724 0.22 -0.4
156,840 - GFF2724 0.22 -0.7
156,899 + GFF2724 0.27 -1.9
156,900 - GFF2724 0.27 -0.9
156,926 + GFF2724 0.30 -0.2
156,926 + GFF2724 0.30 -0.2
156,926 + GFF2724 0.30 -1.8
156,926 + GFF2724 0.30 -1.0
156,927 - GFF2724 0.30 -1.4
156,927 - GFF2724 0.30 -0.4
156,927 - GFF2724 0.30 -0.2
156,927 - GFF2724 0.30 +0.6
156,927 - GFF2724 0.30 -1.3
156,927 - GFF2724 0.30 -0.7
156,927 - GFF2724 0.30 -0.1
156,929 - GFF2724 0.30 -1.1
156,953 + GFF2724 0.32 -0.3
156,953 + GFF2724 0.32 -1.0
156,954 - GFF2724 0.32 +0.2
156,983 + GFF2724 0.35 -1.0
156,983 + GFF2724 0.35 -1.9
156,983 + GFF2724 0.35 -0.1
156,984 - GFF2724 0.35 -0.1
156,984 - GFF2724 0.35 +0.1
156,984 - GFF2724 0.35 -1.6
156,984 - GFF2724 0.35 +1.6
157,046 + GFF2724 0.41 -0.5
157,087 - GFF2724 0.45 +0.1
157,087 - GFF2724 0.45 -1.9
157,193 + GFF2724 0.55 -0.7
157,193 + GFF2724 0.55 -0.6
157,193 + GFF2724 0.55 -0.1
157,194 - GFF2724 0.55 -1.1
157,194 - GFF2724 0.55 +0.1
157,283 + GFF2724 0.63 -0.3
157,283 + GFF2724 0.63 +0.2
157,284 - GFF2724 0.63 +0.1
157,358 + GFF2724 0.70 +0.2
157,358 + GFF2724 0.70 +0.7
157,358 + GFF2724 0.70 -0.8
157,359 - GFF2724 0.70 -1.1
157,361 + GFF2724 0.70 +0.2
157,508 + GFF2724 0.84 +0.6
157,508 + GFF2724 0.84 -0.1
157,508 + GFF2724 0.84 +0.4
157,508 + GFF2724 0.84 -0.2
157,508 + GFF2724 0.84 -1.4
157,508 + GFF2724 0.84 +0.3
157,508 + GFF2724 0.84 +0.2
157,509 - GFF2724 0.84 -1.6
157,509 - GFF2724 0.84 -0.3
157,509 - GFF2724 0.84 -1.6
157,509 - GFF2724 0.84 +0.1
157,509 - GFF2724 0.84 +0.6

Or see this region's nucleotide sequence