Strain Fitness in Variovorax sp. SCN45 around GFF2601

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2600 and GFF2601 are separated by 199 nucleotidesGFF2601 and GFF2602 are separated by 8 nucleotidesGFF2602 and GFF2603 are separated by 69 nucleotides GFF2600 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 5,672 to 6,595 GFF2600 GFF2601 - Transcriptional regulator, IclR family, at 6,795 to 7,580 GFF2601 GFF2602 - no description, at 7,589 to 8,254 GFF2602 GFF2603 - Tripartite tricarboxylate transporter TctC family, at 8,324 to 9,334 GFF2603 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1at 5.803 kb on - strand, within GFF2600at 5.803 kb on - strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.811 kb on + strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 5.812 kb on - strand, within GFF2600at 6.012 kb on + strand, within GFF2600at 6.013 kb on - strand, within GFF2600at 6.013 kb on - strand, within GFF2600at 6.013 kb on - strand, within GFF2600at 6.013 kb on - strand, within GFF2600at 6.013 kb on - strand, within GFF2600at 6.111 kb on + strand, within GFF2600at 6.111 kb on + strand, within GFF2600at 6.111 kb on + strand, within GFF2600at 6.111 kb on + strand, within GFF2600at 6.111 kb on + strand, within GFF2600at 6.112 kb on - strand, within GFF2600at 6.112 kb on - strand, within GFF2600at 6.112 kb on - strand, within GFF2600at 6.561 kb on + strandat 6.561 kb on + strandat 6.561 kb on + strandat 6.562 kb on - strandat 6.562 kb on - strandat 6.647 kb on + strandat 6.647 kb on + strandat 6.648 kb on - strandat 6.648 kb on - strandat 6.648 kb on - strandat 6.678 kb on - strandat 6.759 kb on + strandat 6.760 kb on - strandat 6.760 kb on - strandat 6.760 kb on - strandat 6.760 kb on - strandat 6.990 kb on + strand, within GFF2601at 6.990 kb on + strand, within GFF2601at 6.990 kb on + strand, within GFF2601at 6.990 kb on + strand, within GFF2601at 6.990 kb on + strand, within GFF2601at 6.991 kb on - strand, within GFF2601at 6.991 kb on - strand, within GFF2601at 6.991 kb on - strand, within GFF2601at 7.053 kb on + strand, within GFF2601at 7.054 kb on - strand, within GFF2601at 7.054 kb on - strand, within GFF2601at 7.054 kb on - strand, within GFF2601at 7.132 kb on - strand, within GFF2601at 7.132 kb on - strand, within GFF2601at 7.132 kb on - strand, within GFF2601at 7.164 kb on + strand, within GFF2601at 7.164 kb on + strand, within GFF2601at 7.164 kb on + strand, within GFF2601at 7.165 kb on - strand, within GFF2601at 7.165 kb on - strand, within GFF2601at 7.165 kb on - strand, within GFF2601at 7.165 kb on - strand, within GFF2601at 7.165 kb on - strand, within GFF2601at 7.206 kb on + strand, within GFF2601at 7.206 kb on + strand, within GFF2601at 7.206 kb on + strand, within GFF2601at 7.207 kb on - strand, within GFF2601at 7.207 kb on - strand, within GFF2601at 7.207 kb on - strand, within GFF2601at 7.207 kb on - strand, within GFF2601at 7.238 kb on - strand, within GFF2601at 7.706 kb on + strand, within GFF2602at 7.707 kb on - strand, within GFF2602at 7.707 kb on - strand, within GFF2602at 7.709 kb on + strand, within GFF2602at 7.766 kb on + strand, within GFF2602at 7.779 kb on + strand, within GFF2602at 8.042 kb on + strand, within GFF2602at 8.043 kb on - strand, within GFF2602at 8.090 kb on + strand, within GFF2602at 8.090 kb on + strand, within GFF2602at 8.090 kb on + strand, within GFF2602at 8.090 kb on + strand, within GFF2602at 8.090 kb on + strand, within GFF2602at 8.090 kb on + strand, within GFF2602at 8.090 kb on + strand, within GFF2602at 8.090 kb on + strand, within GFF2602at 8.091 kb on - strand, within GFF2602at 8.091 kb on - strand, within GFF2602at 8.091 kb on - strand, within GFF2602at 8.091 kb on - strand, within GFF2602at 8.091 kb on - strand, within GFF2602at 8.091 kb on - strand, within GFF2602at 8.115 kb on + strand, within GFF2602at 8.147 kb on + strand, within GFF2602at 8.234 kb on + strandat 8.234 kb on + strandat 8.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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5,803 - GFF2600 0.14 -1.8
5,803 - GFF2600 0.14 -0.4
5,811 + GFF2600 0.15 +1.1
5,811 + GFF2600 0.15 -0.0
5,811 + GFF2600 0.15 -0.1
5,811 + GFF2600 0.15 +0.6
5,811 + GFF2600 0.15 +0.7
5,811 + GFF2600 0.15 -0.3
5,811 + GFF2600 0.15 -0.0
5,811 + GFF2600 0.15 +0.8
5,811 + GFF2600 0.15 +0.1
5,811 + GFF2600 0.15 -1.0
5,811 + GFF2600 0.15 -0.1
5,811 + GFF2600 0.15 -1.1
5,812 - GFF2600 0.15 -0.4
5,812 - GFF2600 0.15 -0.3
5,812 - GFF2600 0.15 -0.6
5,812 - GFF2600 0.15 +0.1
5,812 - GFF2600 0.15 -0.2
5,812 - GFF2600 0.15 -0.1
5,812 - GFF2600 0.15 -0.0
5,812 - GFF2600 0.15 +0.2
5,812 - GFF2600 0.15 +0.3
5,812 - GFF2600 0.15 +0.6
5,812 - GFF2600 0.15 -0.5
5,812 - GFF2600 0.15 +1.1
6,012 + GFF2600 0.37 +0.2
6,013 - GFF2600 0.37 +0.1
6,013 - GFF2600 0.37 +0.6
6,013 - GFF2600 0.37 -0.4
6,013 - GFF2600 0.37 +1.2
6,013 - GFF2600 0.37 -0.8
6,111 + GFF2600 0.48 -1.0
6,111 + GFF2600 0.48 -0.2
6,111 + GFF2600 0.48 +0.7
6,111 + GFF2600 0.48 -0.2
6,111 + GFF2600 0.48 -0.0
6,112 - GFF2600 0.48 -0.4
6,112 - GFF2600 0.48 -0.9
6,112 - GFF2600 0.48 -0.5
6,561 + +0.3
6,561 + +0.8
6,561 + -0.1
6,562 - +1.0
6,562 - +1.6
6,647 + -0.2
6,647 + -0.3
6,648 - -0.4
6,648 - -0.6
6,648 - -0.2
6,678 - +1.0
6,759 + -0.4
6,760 - +0.1
6,760 - +0.4
6,760 - -1.4
6,760 - -1.6
6,990 + GFF2601 0.25 -0.4
6,990 + GFF2601 0.25 -0.3
6,990 + GFF2601 0.25 +0.1
6,990 + GFF2601 0.25 +1.3
6,990 + GFF2601 0.25 +0.9
6,991 - GFF2601 0.25 +1.1
6,991 - GFF2601 0.25 -0.5
6,991 - GFF2601 0.25 +1.3
7,053 + GFF2601 0.33 +0.2
7,054 - GFF2601 0.33 +0.0
7,054 - GFF2601 0.33 -1.6
7,054 - GFF2601 0.33 +0.1
7,132 - GFF2601 0.43 -0.0
7,132 - GFF2601 0.43 -0.8
7,132 - GFF2601 0.43 -0.0
7,164 + GFF2601 0.47 +0.5
7,164 + GFF2601 0.47 +0.1
7,164 + GFF2601 0.47 +0.1
7,165 - GFF2601 0.47 -0.4
7,165 - GFF2601 0.47 -0.6
7,165 - GFF2601 0.47 -0.2
7,165 - GFF2601 0.47 -1.6
7,165 - GFF2601 0.47 -0.4
7,206 + GFF2601 0.52 -0.1
7,206 + GFF2601 0.52 +0.1
7,206 + GFF2601 0.52 +1.3
7,207 - GFF2601 0.52 -0.6
7,207 - GFF2601 0.52 +0.8
7,207 - GFF2601 0.52 -0.1
7,207 - GFF2601 0.52 -0.3
7,238 - GFF2601 0.56 -0.2
7,706 + GFF2602 0.18 -0.3
7,707 - GFF2602 0.18 -0.5
7,707 - GFF2602 0.18 -0.5
7,709 + GFF2602 0.18 -0.0
7,766 + GFF2602 0.27 +1.3
7,779 + GFF2602 0.29 +0.6
8,042 + GFF2602 0.68 +0.6
8,043 - GFF2602 0.68 -0.8
8,090 + GFF2602 0.75 +0.2
8,090 + GFF2602 0.75 -1.4
8,090 + GFF2602 0.75 -0.3
8,090 + GFF2602 0.75 -1.4
8,090 + GFF2602 0.75 -0.2
8,090 + GFF2602 0.75 -0.3
8,090 + GFF2602 0.75 -0.8
8,090 + GFF2602 0.75 +0.2
8,091 - GFF2602 0.75 -0.9
8,091 - GFF2602 0.75 -0.4
8,091 - GFF2602 0.75 +1.2
8,091 - GFF2602 0.75 -0.4
8,091 - GFF2602 0.75 -0.1
8,091 - GFF2602 0.75 -0.3
8,115 + GFF2602 0.79 -0.0
8,147 + GFF2602 0.84 -1.3
8,234 + -0.0
8,234 + -0.8
8,235 - -0.6

Or see this region's nucleotide sequence