Strain Fitness in Variovorax sp. SCN45 around GFF2533

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2532 and GFF2533 are separated by 52 nucleotidesGFF2533 and GFF2534 are separated by 127 nucleotides GFF2532 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 591,249 to 593,714 GFF2532 GFF2533 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 593,767 to 594,510 GFF2533 GFF2534 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 594,638 to 595,645 GFF2534 Position (kb) 593 594 595Strain fitness (log2 ratio) -2 -1 0 1 2at 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.725 kb on + strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.726 kb on - strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.742 kb on + strandat 593.743 kb on - strandat 593.743 kb on - strandat 593.743 kb on - strandat 593.743 kb on - strandat 593.752 kb on + strandat 593.753 kb on - strandat 593.864 kb on + strand, within GFF2533at 593.864 kb on + strand, within GFF2533at 593.864 kb on + strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 593.865 kb on - strand, within GFF2533at 594.240 kb on - strand, within GFF2533at 594.489 kb on - strandat 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.780 kb on + strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.781 kb on - strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.969 kb on + strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 594.970 kb on - strand, within GFF2534at 595.341 kb on + strand, within GFF2534at 595.341 kb on + strand, within GFF2534at 595.342 kb on - strand, within GFF2534at 595.342 kb on - strand, within GFF2534at 595.342 kb on - strand, within GFF2534at 595.374 kb on + strand, within GFF2534at 595.374 kb on + strand, within GFF2534at 595.375 kb on - strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.383 kb on + strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534at 595.384 kb on - strand, within GFF2534

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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593,725 + +0.3
593,725 + +0.5
593,725 + +1.3
593,725 + +0.1
593,725 + +0.3
593,725 + -0.0
593,726 - -0.7
593,726 - -0.3
593,726 - +0.7
593,726 - -0.3
593,726 - +0.2
593,726 - -0.1
593,726 - +0.7
593,726 - +0.1
593,726 - -0.4
593,726 - +0.3
593,726 - -0.9
593,726 - +0.4
593,726 - +1.7
593,726 - +0.5
593,726 - -0.3
593,742 + +0.1
593,742 + -0.3
593,742 + -0.3
593,742 + -0.1
593,742 + -0.6
593,742 + +0.2
593,743 - -0.6
593,743 - -0.3
593,743 - -0.5
593,743 - -0.1
593,752 + -0.9
593,753 - -0.4
593,864 + GFF2533 0.13 -0.5
593,864 + GFF2533 0.13 -1.2
593,864 + GFF2533 0.13 -0.8
593,865 - GFF2533 0.13 -0.9
593,865 - GFF2533 0.13 -0.8
593,865 - GFF2533 0.13 +0.7
593,865 - GFF2533 0.13 -1.4
594,240 - GFF2533 0.64 -2.3
594,489 - -0.6
594,780 + GFF2534 0.14 +0.8
594,780 + GFF2534 0.14 +0.2
594,780 + GFF2534 0.14 +0.3
594,780 + GFF2534 0.14 -1.3
594,780 + GFF2534 0.14 -0.4
594,781 - GFF2534 0.14 +0.1
594,781 - GFF2534 0.14 +0.5
594,781 - GFF2534 0.14 -1.7
594,781 - GFF2534 0.14 +0.1
594,969 + GFF2534 0.33 -0.9
594,969 + GFF2534 0.33 -0.6
594,969 + GFF2534 0.33 +0.2
594,969 + GFF2534 0.33 -0.6
594,969 + GFF2534 0.33 +0.2
594,969 + GFF2534 0.33 +0.1
594,969 + GFF2534 0.33 -0.8
594,969 + GFF2534 0.33 -0.3
594,969 + GFF2534 0.33 +0.1
594,970 - GFF2534 0.33 -0.7
594,970 - GFF2534 0.33 -0.0
594,970 - GFF2534 0.33 -0.2
594,970 - GFF2534 0.33 -0.4
594,970 - GFF2534 0.33 +0.2
594,970 - GFF2534 0.33 +0.9
594,970 - GFF2534 0.33 -0.1
594,970 - GFF2534 0.33 -0.6
594,970 - GFF2534 0.33 -0.7
594,970 - GFF2534 0.33 -0.2
594,970 - GFF2534 0.33 -0.9
594,970 - GFF2534 0.33 -0.7
594,970 - GFF2534 0.33 -0.2
595,341 + GFF2534 0.70 -0.9
595,341 + GFF2534 0.70 +1.1
595,342 - GFF2534 0.70 -0.8
595,342 - GFF2534 0.70 -0.8
595,342 - GFF2534 0.70 +0.3
595,374 + GFF2534 0.73 -0.4
595,374 + GFF2534 0.73 -0.1
595,375 - GFF2534 0.73 +1.1
595,383 + GFF2534 0.74 +0.0
595,383 + GFF2534 0.74 -0.7
595,383 + GFF2534 0.74 +1.3
595,383 + GFF2534 0.74 -0.5
595,383 + GFF2534 0.74 -0.7
595,384 - GFF2534 0.74 +2.2
595,384 - GFF2534 0.74 -0.1
595,384 - GFF2534 0.74 -0.1
595,384 - GFF2534 0.74 +0.4
595,384 - GFF2534 0.74 +0.8
595,384 - GFF2534 0.74 +0.8

Or see this region's nucleotide sequence