Strain Fitness in Variovorax sp. SCN45 around GFF2492

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2491 and GFF2492 are separated by 16 nucleotidesGFF2492 and GFF2493 are separated by 12 nucleotidesGFF2493 and GFF2494 are separated by 95 nucleotides GFF2491 - Threonine-synthase-like protein 3, at 549,986 to 551,134 GFF2491 GFF2492 - BUG/TctC family periplasmic protein, at 551,151 to 552,131 GFF2492 GFF2493 - YheO-like PAS domain, at 552,144 to 552,770 GFF2493 GFF2494 - Threonine-synthase-like protein 4, at 552,866 to 554,014 GFF2494 Position (kb) 551 552 553Strain fitness (log2 ratio) -2 -1 0 1 2at 550.178 kb on + strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.178 kb on + strand, within GFF2491at 550.179 kb on - strand, within GFF2491at 550.406 kb on + strand, within GFF2491at 550.406 kb on + strand, within GFF2491at 550.446 kb on - strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.466 kb on + strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.467 kb on - strand, within GFF2491at 550.503 kb on - strand, within GFF2491at 550.556 kb on + strand, within GFF2491at 550.583 kb on + strand, within GFF2491at 550.583 kb on + strand, within GFF2491at 550.583 kb on + strand, within GFF2491at 550.584 kb on - strand, within GFF2491at 550.584 kb on - strand, within GFF2491at 550.584 kb on - strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.620 kb on + strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.621 kb on - strand, within GFF2491at 550.628 kb on + strand, within GFF2491at 550.628 kb on + strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.629 kb on - strand, within GFF2491at 550.721 kb on + strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.722 kb on - strand, within GFF2491at 550.841 kb on + strand, within GFF2491at 550.841 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.889 kb on + strand, within GFF2491at 550.890 kb on - strand, within GFF2491at 550.890 kb on - strand, within GFF2491at 551.140 kb on + strandat 551.141 kb on - strandat 551.141 kb on - strandat 551.415 kb on + strand, within GFF2492at 551.415 kb on + strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.416 kb on - strand, within GFF2492at 551.828 kb on + strand, within GFF2492at 551.828 kb on + strand, within GFF2492at 551.829 kb on - strand, within GFF2492at 551.829 kb on - strand, within GFF2492at 552.146 kb on - strandat 552.146 kb on - strandat 552.160 kb on + strandat 552.160 kb on + strandat 552.160 kb on + strandat 552.160 kb on + strandat 552.161 kb on - strandat 552.161 kb on - strandat 552.466 kb on + strand, within GFF2493at 552.467 kb on - strand, within GFF2493at 552.467 kb on - strand, within GFF2493at 552.467 kb on - strand, within GFF2493at 552.538 kb on + strand, within GFF2493at 552.538 kb on + strand, within GFF2493at 552.538 kb on + strand, within GFF2493at 552.538 kb on + strand, within GFF2493at 552.539 kb on - strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.783 kb on - strandat 552.891 kb on - strandat 553.087 kb on + strand, within GFF2494at 553.088 kb on - strand, within GFF2494at 553.088 kb on - strand, within GFF2494at 553.088 kb on - strand, within GFF2494at 553.088 kb on - strand, within GFF2494at 553.128 kb on - strand, within GFF2494

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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550,178 + GFF2491 0.17 +1.2
550,178 + GFF2491 0.17 +0.5
550,178 + GFF2491 0.17 +0.7
550,178 + GFF2491 0.17 -0.7
550,179 - GFF2491 0.17 -0.3
550,406 + GFF2491 0.37 -0.5
550,406 + GFF2491 0.37 -0.9
550,446 - GFF2491 0.40 +0.5
550,466 + GFF2491 0.42 -0.8
550,466 + GFF2491 0.42 -0.0
550,466 + GFF2491 0.42 -0.3
550,466 + GFF2491 0.42 +0.3
550,467 - GFF2491 0.42 -0.1
550,467 - GFF2491 0.42 -0.0
550,467 - GFF2491 0.42 -0.4
550,467 - GFF2491 0.42 -0.9
550,467 - GFF2491 0.42 -1.2
550,467 - GFF2491 0.42 -0.6
550,503 - GFF2491 0.45 -0.3
550,556 + GFF2491 0.50 +0.3
550,583 + GFF2491 0.52 -0.1
550,583 + GFF2491 0.52 +0.0
550,583 + GFF2491 0.52 +0.4
550,584 - GFF2491 0.52 +0.4
550,584 - GFF2491 0.52 -0.1
550,584 - GFF2491 0.52 -0.6
550,620 + GFF2491 0.55 -0.8
550,620 + GFF2491 0.55 -0.7
550,620 + GFF2491 0.55 +0.4
550,620 + GFF2491 0.55 +0.3
550,620 + GFF2491 0.55 -0.8
550,620 + GFF2491 0.55 -0.6
550,621 - GFF2491 0.55 -0.4
550,621 - GFF2491 0.55 -0.2
550,621 - GFF2491 0.55 -0.1
550,621 - GFF2491 0.55 -0.3
550,621 - GFF2491 0.55 -2.0
550,621 - GFF2491 0.55 +0.5
550,628 + GFF2491 0.56 +0.0
550,628 + GFF2491 0.56 -0.0
550,629 - GFF2491 0.56 +0.2
550,629 - GFF2491 0.56 -0.8
550,629 - GFF2491 0.56 -0.0
550,629 - GFF2491 0.56 -0.3
550,629 - GFF2491 0.56 -0.7
550,629 - GFF2491 0.56 -0.1
550,721 + GFF2491 0.64 -0.5
550,722 - GFF2491 0.64 -1.3
550,722 - GFF2491 0.64 +0.7
550,722 - GFF2491 0.64 -0.8
550,722 - GFF2491 0.64 -0.3
550,722 - GFF2491 0.64 -0.4
550,841 + GFF2491 0.74 +0.1
550,841 + GFF2491 0.74 +0.1
550,889 + GFF2491 0.79 -0.1
550,889 + GFF2491 0.79 -0.7
550,889 + GFF2491 0.79 -1.3
550,889 + GFF2491 0.79 -0.1
550,889 + GFF2491 0.79 -0.8
550,889 + GFF2491 0.79 +0.1
550,889 + GFF2491 0.79 -0.6
550,890 - GFF2491 0.79 -0.1
550,890 - GFF2491 0.79 +0.1
551,140 + +0.3
551,141 - +0.1
551,141 - -0.2
551,415 + GFF2492 0.27 +0.5
551,415 + GFF2492 0.27 +0.2
551,416 - GFF2492 0.27 -0.8
551,416 - GFF2492 0.27 +2.0
551,416 - GFF2492 0.27 -0.1
551,416 - GFF2492 0.27 +0.3
551,416 - GFF2492 0.27 +1.3
551,416 - GFF2492 0.27 -0.7
551,828 + GFF2492 0.69 +0.4
551,828 + GFF2492 0.69 -0.6
551,829 - GFF2492 0.69 +0.3
551,829 - GFF2492 0.69 -0.5
552,146 - +0.2
552,146 - -1.6
552,160 + -0.3
552,160 + -0.8
552,160 + +0.0
552,160 + +0.1
552,161 - -0.3
552,161 - -0.7
552,466 + GFF2493 0.51 -0.2
552,467 - GFF2493 0.52 -0.1
552,467 - GFF2493 0.52 -0.4
552,467 - GFF2493 0.52 +0.7
552,538 + GFF2493 0.63 -0.9
552,538 + GFF2493 0.63 +0.1
552,538 + GFF2493 0.63 -0.8
552,538 + GFF2493 0.63 -0.3
552,539 - GFF2493 0.63 -0.7
552,643 + GFF2493 0.80 +0.2
552,643 + GFF2493 0.80 +1.0
552,643 + GFF2493 0.80 +0.7
552,643 + GFF2493 0.80 -0.5
552,643 + GFF2493 0.80 +0.1
552,643 + GFF2493 0.80 -0.1
552,643 + GFF2493 0.80 -0.1
552,644 - GFF2493 0.80 +1.0
552,644 - GFF2493 0.80 -0.3
552,644 - GFF2493 0.80 +0.9
552,644 - GFF2493 0.80 -0.1
552,644 - GFF2493 0.80 -0.1
552,644 - GFF2493 0.80 -1.0
552,783 - +0.3
552,891 - -0.6
553,087 + GFF2494 0.19 -0.3
553,088 - GFF2494 0.19 -0.5
553,088 - GFF2494 0.19 +0.4
553,088 - GFF2494 0.19 -0.3
553,088 - GFF2494 0.19 +1.1
553,128 - GFF2494 0.23 +0.4

Or see this region's nucleotide sequence