Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2473 and GFF2474 are separated by 214 nucleotides GFF2474 and GFF2475 overlap by 4 nucleotides GFF2475 and GFF2476 are separated by 130 nucleotides GFF2476 and GFF2477 are separated by 37 nucleotides
GFF2473 - hypothetical protein, at 532,282 to 532,893
GFF2473
GFF2474 - Two-component transcriptional response regulator SMc02366, LuxR family, at 533,108 to 533,791
GFF2474
GFF2475 - no description, at 533,788 to 535,158
GFF2475
GFF2476 - Tripartite tricarboxylate transporter TctB family, at 535,289 to 535,777
GFF2476
GFF2477 - Tripartite tricarboxylate transporter TctA family, at 535,815 to 537,326
GFF2477
Position (kb) 533
534
535
536 Strain fitness (log2 ratio) -1
0
1 at 532.822 kb on + strand, within GFF2473 at 532.822 kb on + strand, within GFF2473 at 532.823 kb on - strand, within GFF2473 at 532.823 kb on - strand, within GFF2473 at 532.891 kb on + strand at 532.891 kb on + strand at 532.892 kb on - strand at 532.892 kb on - strand at 532.916 kb on - strand at 532.953 kb on + strand at 532.954 kb on - strand at 533.055 kb on + strand at 533.095 kb on - strand at 533.095 kb on - strand at 533.095 kb on - strand at 533.153 kb on + strand at 533.405 kb on + strand, within GFF2474 at 533.405 kb on + strand, within GFF2474 at 533.406 kb on - strand, within GFF2474 at 533.658 kb on - strand, within GFF2474 at 533.843 kb on - strand at 533.894 kb on - strand at 534.052 kb on + strand, within GFF2475 at 534.052 kb on + strand, within GFF2475 at 534.178 kb on + strand, within GFF2475 at 534.887 kb on - strand, within GFF2475 at 535.210 kb on + strand at 535.210 kb on + strand at 535.210 kb on + strand at 535.210 kb on + strand at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.409 kb on + strand, within GFF2476 at 535.410 kb on - strand, within GFF2476 at 535.622 kb on + strand, within GFF2476 at 535.623 kb on - strand, within GFF2476 at 535.712 kb on + strand, within GFF2476 at 535.712 kb on + strand, within GFF2476 at 535.713 kb on - strand, within GFF2476 at 535.764 kb on + strand at 535.826 kb on + strand at 535.827 kb on - strand at 536.106 kb on + strand, within GFF2477
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 532,822 + GFF2473 0.88 -0.3 532,822 + GFF2473 0.88 +0.4 532,823 - GFF2473 0.88 -1.7 532,823 - GFF2473 0.88 -0.8 532,891 + -0.5 532,891 + -1.0 532,892 - -0.4 532,892 - +0.6 532,916 - +0.1 532,953 + +0.0 532,954 - -1.2 533,055 + +0.0 533,095 - +0.7 533,095 - -0.6 533,095 - +1.7 533,153 + -0.0 533,405 + GFF2474 0.43 -0.5 533,405 + GFF2474 0.43 -1.0 533,406 - GFF2474 0.44 -0.6 533,658 - GFF2474 0.80 -0.2 533,843 - -0.1 533,894 - +1.0 534,052 + GFF2475 0.19 -0.6 534,052 + GFF2475 0.19 +0.7 534,178 + GFF2475 0.28 -0.7 534,887 - GFF2475 0.80 -1.3 535,210 + +1.1 535,210 + +1.1 535,210 + +1.2 535,210 + -0.4 535,374 - GFF2476 0.17 +0.3 535,374 - GFF2476 0.17 -0.9 535,374 - GFF2476 0.17 +0.1 535,374 - GFF2476 0.17 -0.7 535,409 + GFF2476 0.25 -0.4 535,410 - GFF2476 0.25 +1.1 535,622 + GFF2476 0.68 -1.1 535,623 - GFF2476 0.68 -0.3 535,712 + GFF2476 0.87 -0.6 535,712 + GFF2476 0.87 -0.9 535,713 - GFF2476 0.87 +0.1 535,764 + +0.3 535,826 + -0.3 535,827 - -1.0 536,106 + GFF2477 0.19 -0.4
Or see this region's nucleotide sequence