Strain Fitness in Variovorax sp. SCN45 around GFF2352

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
401,753	-				-0.3
401,753	-				-0.5
401,753	-				-1.2
401,753	-				+0.9
401,930	-		GFF2352	0.18	-0.8
401,930	-		GFF2352	0.18	-0.3
401,930	-		GFF2352	0.18	-0.2
401,930	-		GFF2352	0.18	-1.9
401,930	-		GFF2352	0.18	-2.5
401,930	-		GFF2352	0.18	-0.3
401,930	-		GFF2352	0.18	-0.1
401,930	-		GFF2352	0.18	-0.7
401,930	-		GFF2352	0.18	-0.9
401,930	-		GFF2352	0.18	-0.2
402,029	-		GFF2352	0.24	-1.0
402,029	-		GFF2352	0.24	-0.9
402,095	-		GFF2352	0.27	-1.2
402,120	+		GFF2352	0.29	-2.0
402,120	+		GFF2352	0.29	-0.5
402,120	+		GFF2352	0.29	-0.5
402,120	+		GFF2352	0.29	-0.7
402,120	+		GFF2352	0.29	+1.0
402,121	+		GFF2352	0.29	-0.2
402,121	-		GFF2352	0.29	+1.1
402,121	-		GFF2352	0.29	+0.1
402,121	-		GFF2352	0.29	+0.8
402,338	-		GFF2352	0.40	-1.1
402,338	-		GFF2352	0.40	+0.2
402,338	-		GFF2352	0.40	+0.3
402,338	-		GFF2352	0.40	-0.8
402,338	-		GFF2352	0.40	-2.2
402,575	-		GFF2352	0.53	+0.1
402,575	-		GFF2352	0.53	-0.6
402,575	-		GFF2352	0.53	-0.1
402,575	-		GFF2352	0.53	-1.0
402,878	-		GFF2352	0.70	-0.4
403,211	-		GFF2352	0.87	-0.2
403,453	+				-0.3
403,453	+				+0.1
403,453	+				-0.5
403,453	+				+0.4
403,453	+				-0.8
403,453	+				-1.8
403,453	+				+0.0
403,453	+				-0.1
403,454	-				-0.2
403,454	-				+0.4
403,454	-				-0.9
403,454	-				-0.9
403,454	-				-0.4
403,454	-				+1.4
403,454	-				-0.4
403,454	-				-0.3
403,454	-				+1.0
403,454	-				-0.6
403,454	-				+0.1
403,454	-				-1.7
403,454	-				-0.1
403,454	-				-0.2
403,454	-				+0.2
403,517	-				-0.4
403,534	+				-1.3
403,600	+				-0.5
403,692	+		GFF2353	0.21	-0.2
403,692	+		GFF2353	0.21	-1.4
403,692	+		GFF2353	0.21	-0.1
403,692	+		GFF2353	0.21	-0.0
403,693	-		GFF2353	0.21	-2.2
403,693	-		GFF2353	0.21	+0.0
403,693	-		GFF2353	0.21	-0.9
403,693	-		GFF2353	0.21	-0.3
403,863	+		GFF2353	0.42	+0.1
403,863	+		GFF2353	0.42	+0.2
403,864	-		GFF2353	0.42	-0.2
403,864	-		GFF2353	0.42	+1.3
404,037	+		GFF2353	0.63	-0.5
404,037	+		GFF2353	0.63	-0.2
404,037	+		GFF2353	0.63	-1.1
404,037	+		GFF2353	0.63	-0.3
404,037	+		GFF2353	0.63	-0.7
404,037	+		GFF2353	0.63	-0.7
404,037	+		GFF2353	0.63	+0.3
404,037	+		GFF2353	0.63	-0.2
404,037	+		GFF2353	0.63	-1.0
404,037	+		GFF2353	0.63	-0.1
404,037	+		GFF2353	0.63	-1.7
404,037	+		GFF2353	0.63	+0.8
404,037	+		GFF2353	0.63	+0.2
404,037	+		GFF2353	0.63	-0.5
404,037	+		GFF2353	0.63	-0.1
404,037	+		GFF2353	0.63	-0.5
404,037	+		GFF2353	0.63	-0.1
404,037	+		GFF2353	0.63	-0.7
404,038	-		GFF2353	0.63	-0.4
404,038	-		GFF2353	0.63	+0.0
404,038	-		GFF2353	0.63	+0.3
404,038	-		GFF2353	0.63	+1.1
404,038	-		GFF2353	0.63	-0.7
404,038	-		GFF2353	0.63	+0.1
404,038	-		GFF2353	0.63	-0.2
404,038	-		GFF2353	0.63	-0.4
404,038	-		GFF2353	0.63	-2.2
404,038	-		GFF2353	0.63	-1.6
404,038	-		GFF2353	0.63	-0.3
404,038	-		GFF2353	0.63	+1.4
404,038	-		GFF2353	0.63	-0.1
404,038	-		GFF2353	0.63	+0.5
404,038	-		GFF2353	0.63	-0.2
404,038	-		GFF2353	0.63	+1.7
404,038	-		GFF2353	0.63	+0.0
404,038	-		GFF2353	0.63	-0.3
404,038	-		GFF2353	0.63	-1.9
404,038	-		GFF2353	0.63	-0.1
404,038	-		GFF2353	0.63	+0.5
404,038	-		GFF2353	0.63	+0.3
404,038	-		GFF2353	0.63	-1.7
404,212	-		GFF2353	0.85	-0.4
404,212	-		GFF2353	0.85	+0.3
404,212	-		GFF2353	0.85	-0.7
404,212	-		GFF2353	0.85	-0.7
404,235	+		GFF2353	0.87	+0.1
404,235	+		GFF2353	0.87	+0.1
404,235	+		GFF2353	0.87	-0.6
404,235	+		GFF2353	0.87	-0.1
404,235	+		GFF2353	0.87	-0.3
404,235	+		GFF2353	0.87	-0.5
404,235	+		GFF2353	0.87	+0.8
404,235	+		GFF2353	0.87	+0.3
404,235	+		GFF2353	0.87	+1.1
404,235	+		GFF2353	0.87	+0.1
404,235	+		GFF2353	0.87	-0.6
404,235	+		GFF2353	0.87	-0.4
404,236	-		GFF2353	0.88	-0.7
404,236	-		GFF2353	0.88	-0.5
404,236	-		GFF2353	0.88	-0.3
404,236	-		GFF2353	0.88	+1.4
404,236	-		GFF2353	0.88	+0.4
404,236	-		GFF2353	0.88	+0.1
404,236	-		GFF2353	0.88	-0.3
404,236	-		GFF2353	0.88	-0.3
404,236	-		GFF2353	0.88	-1.3
404,310	+				+0.7
404,310	+				-0.9
404,310	+				-0.2
404,310	+				-0.3
404,310	+				+0.4
404,310	+				+0.4
404,310	+				+0.1
404,310	+				-1.7
404,310	+				-0.5
404,310	+				-0.3
404,310	+				-0.8
404,310	+				-0.1
404,310	+				-0.8
404,310	+				+0.0
404,310	+				+0.1
404,310	+				+0.1
404,310	+				+1.3
404,310	+				+0.4
404,310	+				-0.5
404,310	+				-0.1
404,310	+				+0.1
404,310	+				+1.1
404,310	+				+0.7
404,310	+				-0.7
404,311	-				-0.5
404,311	-				-0.6
404,311	-				-0.4
404,311	-				-0.4
404,311	-				-0.1
404,311	-				+0.9
404,311	-				+0.4
404,311	-				-0.7
404,311	-				+0.7
404,311	-				-0.7
404,311	-				+0.7
404,311	-				+1.9
404,311	-				-1.9
404,311	-				-1.3
404,311	-				-0.1
404,311	-				+0.7
404,311	-				-1.3
404,311	-				-2.2
404,311	-				-0.2
404,311	-				+0.1
404,311	-				-0.1
404,311	-				-1.7
404,311	-				-0.1
404,311	-				-0.3
404,311	-				+0.3
404,311	-				+1.1
404,311	-				-0.0
404,311	-				+0.2
404,311	-				+0.5
404,311	-				+0.9
404,311	-				-0.3
404,311	-				-1.2
404,311	-				-0.5
404,311	-				+0.1
404,311	-				-0.7
404,311	-				+0.9
404,311	-				-0.4
404,311	-				-0.7
404,311	-				+0.3
404,311	-				+0.1
404,311	-				+0.3
404,311	-				+0.4
404,311	-				-0.6
404,311	-				+0.3
404,311	-				+0.7
404,313	+				+0.2
404,313	+				+0.6
404,313	+				+0.6
404,313	+				-0.3
404,313	+				-0.3
404,313	+				+0.1
404,313	+				+0.1
404,313	+				+1.7
404,313	+				-0.1
404,313	+				-0.3
404,314	-				-1.1
404,314	-				-0.1
404,314	-				+0.1
404,314	-				+0.3
404,314	-				-1.4
404,314	-				-0.4
404,314	-				+2.3
404,314	-				+0.5
404,334	+				-1.0
404,335	-				-0.3
404,359	+				+0.4
404,360	-				-0.2
404,360	-				-0.0
404,360	-				-0.2
404,395	-				+1.3
404,395	-				-0.3
404,397	-				-0.5