Strain Fitness in Variovorax sp. SCN45 around GFF2340

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2339 and GFF2340 are separated by 213 nucleotidesGFF2340 and GFF2341 are separated by 120 nucleotidesGFF2341 and GFF2342 overlap by 4 nucleotides GFF2339 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 389,545 to 391,032 GFF2339 GFF2340 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 391,246 to 392,739 GFF2340 GFF2341 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 392,860 to 393,690 GFF2341 GFF2342 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 393,687 to 394,676 GFF2342 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 390.476 kb on + strand, within GFF2339at 390.477 kb on - strand, within GFF2339at 390.606 kb on - strand, within GFF2339at 390.606 kb on - strand, within GFF2339at 390.606 kb on - strand, within GFF2339at 390.606 kb on - strand, within GFF2339at 390.606 kb on - strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.761 kb on + strand, within GFF2339at 390.762 kb on - strand, within GFF2339at 390.762 kb on - strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.857 kb on + strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 390.858 kb on - strand, within GFF2339at 391.008 kb on + strandat 391.009 kb on - strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.032 kb on + strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.033 kb on - strandat 391.400 kb on + strand, within GFF2340at 391.400 kb on + strand, within GFF2340at 391.401 kb on - strand, within GFF2340at 391.482 kb on - strand, within GFF2340at 391.485 kb on - strand, within GFF2340at 391.499 kb on + strand, within GFF2340at 391.499 kb on + strand, within GFF2340at 391.499 kb on + strand, within GFF2340at 391.499 kb on + strand, within GFF2340at 391.500 kb on - strand, within GFF2340at 391.500 kb on - strand, within GFF2340at 391.500 kb on - strand, within GFF2340at 391.500 kb on - strand, within GFF2340at 391.500 kb on - strand, within GFF2340at 391.547 kb on + strand, within GFF2340at 391.547 kb on + strand, within GFF2340at 391.548 kb on - strand, within GFF2340at 391.548 kb on - strand, within GFF2340at 391.548 kb on - strand, within GFF2340at 391.548 kb on - strand, within GFF2340at 391.548 kb on - strand, within GFF2340at 391.562 kb on + strand, within GFF2340at 391.562 kb on + strand, within GFF2340at 391.563 kb on - strand, within GFF2340at 391.751 kb on + strand, within GFF2340at 391.751 kb on + strand, within GFF2340at 391.751 kb on + strand, within GFF2340at 391.752 kb on - strand, within GFF2340at 391.778 kb on + strand, within GFF2340at 391.778 kb on + strand, within GFF2340at 391.778 kb on + strand, within GFF2340at 391.778 kb on + strand, within GFF2340at 391.779 kb on - strand, within GFF2340at 391.799 kb on + strand, within GFF2340at 391.799 kb on + strand, within GFF2340at 391.799 kb on + strand, within GFF2340at 391.800 kb on - strand, within GFF2340at 391.800 kb on - strand, within GFF2340at 392.465 kb on + strand, within GFF2340at 392.466 kb on - strand, within GFF2340at 392.466 kb on - strand, within GFF2340at 392.466 kb on - strand, within GFF2340at 392.466 kb on - strand, within GFF2340at 392.561 kb on + strand, within GFF2340at 392.561 kb on + strand, within GFF2340at 392.561 kb on + strand, within GFF2340at 392.561 kb on + strand, within GFF2340at 392.562 kb on - strand, within GFF2340at 392.562 kb on - strand, within GFF2340at 392.810 kb on - strandat 392.825 kb on + strandat 392.924 kb on + strandat 393.369 kb on - strand, within GFF2341at 393.632 kb on + strandat 393.632 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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390,476 + GFF2339 0.63 -0.3
390,477 - GFF2339 0.63 -2.5
390,606 - GFF2339 0.71 -0.0
390,606 - GFF2339 0.71 +0.5
390,606 - GFF2339 0.71 +1.0
390,606 - GFF2339 0.71 -0.6
390,606 - GFF2339 0.71 -0.7
390,761 + GFF2339 0.82 +0.1
390,761 + GFF2339 0.82 +0.2
390,761 + GFF2339 0.82 -1.0
390,761 + GFF2339 0.82 +0.7
390,761 + GFF2339 0.82 -0.5
390,761 + GFF2339 0.82 -0.7
390,761 + GFF2339 0.82 -0.6
390,762 - GFF2339 0.82 +0.1
390,762 - GFF2339 0.82 -0.1
390,857 + GFF2339 0.88 +0.2
390,857 + GFF2339 0.88 +0.1
390,857 + GFF2339 0.88 +2.1
390,857 + GFF2339 0.88 -0.5
390,857 + GFF2339 0.88 -1.0
390,857 + GFF2339 0.88 -2.4
390,858 - GFF2339 0.88 +0.1
390,858 - GFF2339 0.88 +0.6
390,858 - GFF2339 0.88 -2.1
390,858 - GFF2339 0.88 -0.1
390,858 - GFF2339 0.88 -0.7
390,858 - GFF2339 0.88 -1.0
390,858 - GFF2339 0.88 -0.2
390,858 - GFF2339 0.88 -0.7
391,008 + +0.3
391,009 - -0.2
391,032 + -0.6
391,032 + -0.1
391,032 + -0.7
391,032 + -1.0
391,032 + -0.2
391,032 + -1.3
391,032 + +0.0
391,032 + +0.1
391,032 + -0.1
391,032 + +0.7
391,032 + -0.7
391,033 - +0.1
391,033 - -1.2
391,033 - +0.8
391,033 - -0.6
391,033 - -0.2
391,033 - -0.7
391,033 - +0.1
391,033 - -0.7
391,033 - -0.7
391,033 - -0.1
391,033 - -0.1
391,400 + GFF2340 0.10 -0.7
391,400 + GFF2340 0.10 -2.9
391,401 - GFF2340 0.10 +0.8
391,482 - GFF2340 0.16 +0.1
391,485 - GFF2340 0.16 +0.3
391,499 + GFF2340 0.17 -1.5
391,499 + GFF2340 0.17 -0.3
391,499 + GFF2340 0.17 -0.7
391,499 + GFF2340 0.17 +0.4
391,500 - GFF2340 0.17 +0.1
391,500 - GFF2340 0.17 -2.1
391,500 - GFF2340 0.17 -0.0
391,500 - GFF2340 0.17 -0.2
391,500 - GFF2340 0.17 +2.7
391,547 + GFF2340 0.20 -0.3
391,547 + GFF2340 0.20 -0.9
391,548 - GFF2340 0.20 +0.9
391,548 - GFF2340 0.20 -0.7
391,548 - GFF2340 0.20 -0.9
391,548 - GFF2340 0.20 -1.0
391,548 - GFF2340 0.20 -1.0
391,562 + GFF2340 0.21 -1.5
391,562 + GFF2340 0.21 -0.5
391,563 - GFF2340 0.21 -0.7
391,751 + GFF2340 0.34 +0.3
391,751 + GFF2340 0.34 -1.0
391,751 + GFF2340 0.34 -0.2
391,752 - GFF2340 0.34 -1.5
391,778 + GFF2340 0.36 +0.3
391,778 + GFF2340 0.36 -1.2
391,778 + GFF2340 0.36 +0.4
391,778 + GFF2340 0.36 -0.4
391,779 - GFF2340 0.36 +0.8
391,799 + GFF2340 0.37 -0.9
391,799 + GFF2340 0.37 +0.3
391,799 + GFF2340 0.37 -0.7
391,800 - GFF2340 0.37 +0.1
391,800 - GFF2340 0.37 +0.7
392,465 + GFF2340 0.82 -0.2
392,466 - GFF2340 0.82 +0.3
392,466 - GFF2340 0.82 -0.1
392,466 - GFF2340 0.82 -0.1
392,466 - GFF2340 0.82 +1.7
392,561 + GFF2340 0.88 -1.0
392,561 + GFF2340 0.88 +0.9
392,561 + GFF2340 0.88 -0.8
392,561 + GFF2340 0.88 -0.5
392,562 - GFF2340 0.88 -1.3
392,562 - GFF2340 0.88 -0.2
392,810 - -0.1
392,825 + +0.4
392,924 + -1.4
393,369 - GFF2341 0.61 -0.5
393,632 + -0.1
393,632 + -2.1

Or see this region's nucleotide sequence