Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2320 and GFF2321 are separated by 43 nucleotides GFF2321 and GFF2322 are separated by 6 nucleotides GFF2322 and GFF2323 overlap by 4 nucleotides
GFF2320 - 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171), at 372,198 to 372,845
GFF2320
GFF2321 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 372,889 to 373,392
GFF2321
GFF2322 - Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54), at 373,399 to 374,061
GFF2322
GFF2323 - Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 374,058 to 375,056
GFF2323
Position (kb) 373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 372.663 kb on + strand, within GFF2320 at 372.663 kb on + strand, within GFF2320 at 372.664 kb on - strand, within GFF2320 at 372.718 kb on - strand, within GFF2320 at 372.718 kb on - strand, within GFF2320 at 372.718 kb on - strand, within GFF2320 at 372.718 kb on - strand, within GFF2320 at 372.843 kb on + strand at 372.843 kb on + strand at 372.843 kb on + strand at 372.844 kb on - strand at 372.844 kb on - strand at 372.844 kb on - strand at 373.390 kb on + strand at 373.390 kb on + strand at 373.390 kb on + strand at 373.391 kb on - strand at 373.391 kb on - strand at 373.391 kb on - strand at 373.391 kb on - strand at 373.602 kb on + strand, within GFF2322 at 373.602 kb on + strand, within GFF2322 at 373.603 kb on - strand, within GFF2322 at 373.687 kb on + strand, within GFF2322 at 373.687 kb on + strand, within GFF2322 at 373.687 kb on + strand, within GFF2322 at 373.687 kb on + strand, within GFF2322 at 373.687 kb on + strand, within GFF2322 at 373.688 kb on - strand, within GFF2322 at 373.688 kb on - strand, within GFF2322 at 373.780 kb on + strand, within GFF2322 at 373.780 kb on + strand, within GFF2322 at 373.780 kb on + strand, within GFF2322 at 373.780 kb on + strand, within GFF2322 at 373.780 kb on + strand, within GFF2322 at 373.780 kb on + strand, within GFF2322 at 373.780 kb on + strand, within GFF2322 at 373.781 kb on - strand, within GFF2322 at 373.781 kb on - strand, within GFF2322 at 373.781 kb on - strand, within GFF2322 at 373.781 kb on - strand, within GFF2322 at 373.781 kb on - strand, within GFF2322 at 373.789 kb on + strand, within GFF2322 at 373.790 kb on - strand, within GFF2322 at 373.790 kb on - strand, within GFF2322 at 373.790 kb on - strand, within GFF2322 at 373.790 kb on - strand, within GFF2322 at 373.790 kb on - strand, within GFF2322 at 373.924 kb on + strand, within GFF2322 at 373.924 kb on + strand, within GFF2322 at 373.924 kb on + strand, within GFF2322 at 373.924 kb on + strand, within GFF2322 at 373.924 kb on + strand, within GFF2322 at 373.924 kb on + strand, within GFF2322 at 373.924 kb on + strand, within GFF2322 at 373.924 kb on + strand, within GFF2322 at 373.925 kb on - strand, within GFF2322 at 373.925 kb on - strand, within GFF2322 at 375.000 kb on + strand at 375.001 kb on - strand at 375.001 kb on - strand at 375.001 kb on - strand at 375.054 kb on + strand at 375.054 kb on + strand at 375.054 kb on + strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.055 kb on - strand at 375.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 372,663 + GFF2320 0.72 +0.4 372,663 + GFF2320 0.72 +0.7 372,664 - GFF2320 0.72 -0.3 372,718 - GFF2320 0.80 +0.1 372,718 - GFF2320 0.80 +0.6 372,718 - GFF2320 0.80 +0.2 372,718 - GFF2320 0.80 -0.0 372,843 + -0.5 372,843 + -0.7 372,843 + +0.1 372,844 - -0.3 372,844 - +0.4 372,844 - -0.6 373,390 + -0.4 373,390 + -3.7 373,390 + +0.3 373,391 - -1.0 373,391 - -0.1 373,391 - +0.3 373,391 - -0.7 373,602 + GFF2322 0.31 -0.9 373,602 + GFF2322 0.31 +0.4 373,603 - GFF2322 0.31 -0.5 373,687 + GFF2322 0.43 +0.1 373,687 + GFF2322 0.43 +0.8 373,687 + GFF2322 0.43 +0.7 373,687 + GFF2322 0.43 -0.9 373,687 + GFF2322 0.43 +0.2 373,688 - GFF2322 0.44 +1.3 373,688 - GFF2322 0.44 -0.3 373,780 + GFF2322 0.57 +0.7 373,780 + GFF2322 0.57 +0.2 373,780 + GFF2322 0.57 +0.4 373,780 + GFF2322 0.57 +0.0 373,780 + GFF2322 0.57 -0.2 373,780 + GFF2322 0.57 +0.1 373,780 + GFF2322 0.57 +0.7 373,781 - GFF2322 0.58 -0.4 373,781 - GFF2322 0.58 +0.4 373,781 - GFF2322 0.58 -0.9 373,781 - GFF2322 0.58 +0.1 373,781 - GFF2322 0.58 -2.4 373,789 + GFF2322 0.59 -0.5 373,790 - GFF2322 0.59 -0.9 373,790 - GFF2322 0.59 +1.4 373,790 - GFF2322 0.59 +0.4 373,790 - GFF2322 0.59 +0.3 373,790 - GFF2322 0.59 +0.3 373,924 + GFF2322 0.79 -0.1 373,924 + GFF2322 0.79 -0.6 373,924 + GFF2322 0.79 +0.3 373,924 + GFF2322 0.79 +0.7 373,924 + GFF2322 0.79 -0.8 373,924 + GFF2322 0.79 -0.1 373,924 + GFF2322 0.79 -0.2 373,924 + GFF2322 0.79 +0.6 373,925 - GFF2322 0.79 +0.5 373,925 - GFF2322 0.79 +0.1 375,000 + +0.4 375,001 - -0.6 375,001 - -0.1 375,001 - +0.1 375,054 + -1.3 375,054 + -0.6 375,054 + +1.0 375,055 - +0.3 375,055 - -0.4 375,055 - -0.4 375,055 - -0.3 375,055 - -0.4
Or see this region's nucleotide sequence