Strain Fitness in Variovorax sp. SCN45 around GFF2319

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2318 and GFF2319 are separated by 78 nucleotidesGFF2319 and GFF2320 are separated by 29 nucleotidesGFF2320 and GFF2321 are separated by 43 nucleotides GFF2318 - Transcriptional regulator ArgP, LysR family, at 370,540 to 371,454 GFF2318 GFF2319 - Arginine exporter protein ArgO, at 371,533 to 372,168 GFF2319 GFF2320 - 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171), at 372,198 to 372,845 GFF2320 GFF2321 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 372,889 to 373,392 GFF2321 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2at 370.541 kb on + strandat 370.541 kb on + strandat 370.541 kb on + strandat 370.542 kb on - strandat 370.542 kb on - strandat 370.635 kb on - strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.943 kb on + strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 370.944 kb on - strand, within GFF2318at 371.445 kb on - strandat 371.445 kb on - strandat 371.445 kb on - strandat 371.445 kb on - strandat 371.469 kb on - strandat 371.504 kb on + strandat 371.505 kb on - strandat 371.543 kb on + strandat 371.543 kb on + strandat 371.543 kb on + strandat 371.543 kb on + strandat 371.544 kb on - strandat 371.544 kb on - strandat 371.620 kb on + strand, within GFF2319at 371.620 kb on + strand, within GFF2319at 371.621 kb on - strand, within GFF2319at 371.621 kb on - strand, within GFF2319at 371.621 kb on - strand, within GFF2319at 371.621 kb on - strand, within GFF2319at 371.780 kb on + strand, within GFF2319at 371.780 kb on + strand, within GFF2319at 371.781 kb on - strand, within GFF2319at 371.781 kb on - strand, within GFF2319at 371.781 kb on - strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.794 kb on + strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.795 kb on - strand, within GFF2319at 371.923 kb on + strand, within GFF2319at 371.923 kb on + strand, within GFF2319at 371.923 kb on + strand, within GFF2319at 371.923 kb on + strand, within GFF2319at 371.924 kb on - strand, within GFF2319at 371.924 kb on - strand, within GFF2319at 371.924 kb on - strand, within GFF2319at 372.186 kb on + strandat 372.187 kb on - strandat 372.187 kb on - strandat 372.187 kb on - strandat 372.663 kb on + strand, within GFF2320at 372.663 kb on + strand, within GFF2320at 372.664 kb on - strand, within GFF2320at 372.718 kb on - strand, within GFF2320at 372.718 kb on - strand, within GFF2320at 372.718 kb on - strand, within GFF2320at 372.718 kb on - strand, within GFF2320at 372.843 kb on + strandat 372.843 kb on + strandat 372.843 kb on + strandat 372.844 kb on - strandat 372.844 kb on - strandat 372.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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370,541 + -0.7
370,541 + -0.2
370,541 + -0.1
370,542 - +0.0
370,542 - +0.7
370,635 - GFF2318 0.10 +1.0
370,943 + GFF2318 0.44 -0.5
370,943 + GFF2318 0.44 -0.9
370,943 + GFF2318 0.44 -0.3
370,943 + GFF2318 0.44 +0.2
370,943 + GFF2318 0.44 +0.3
370,943 + GFF2318 0.44 -0.2
370,944 - GFF2318 0.44 -0.7
370,944 - GFF2318 0.44 +2.1
370,944 - GFF2318 0.44 -1.1
370,944 - GFF2318 0.44 -0.9
370,944 - GFF2318 0.44 -0.4
370,944 - GFF2318 0.44 -2.3
370,944 - GFF2318 0.44 -0.0
370,944 - GFF2318 0.44 +1.4
370,944 - GFF2318 0.44 +0.1
370,944 - GFF2318 0.44 -1.5
370,944 - GFF2318 0.44 -0.5
371,445 - -0.5
371,445 - +0.2
371,445 - -1.8
371,445 - -0.2
371,469 - +0.3
371,504 + -2.2
371,505 - -0.0
371,543 + -0.3
371,543 + -0.5
371,543 + +0.9
371,543 + -0.2
371,544 - -0.8
371,544 - -0.4
371,620 + GFF2319 0.14 -0.5
371,620 + GFF2319 0.14 -1.0
371,621 - GFF2319 0.14 -0.8
371,621 - GFF2319 0.14 -1.0
371,621 - GFF2319 0.14 -1.1
371,621 - GFF2319 0.14 -0.6
371,780 + GFF2319 0.39 -0.1
371,780 + GFF2319 0.39 +0.7
371,781 - GFF2319 0.39 +0.1
371,781 - GFF2319 0.39 +0.7
371,781 - GFF2319 0.39 +2.3
371,794 + GFF2319 0.41 +0.1
371,794 + GFF2319 0.41 -0.5
371,794 + GFF2319 0.41 -0.4
371,794 + GFF2319 0.41 -0.0
371,794 + GFF2319 0.41 -0.1
371,794 + GFF2319 0.41 -0.3
371,794 + GFF2319 0.41 +0.1
371,794 + GFF2319 0.41 -0.4
371,795 - GFF2319 0.41 -0.1
371,795 - GFF2319 0.41 -0.1
371,795 - GFF2319 0.41 +0.7
371,795 - GFF2319 0.41 -0.1
371,795 - GFF2319 0.41 -0.3
371,795 - GFF2319 0.41 +1.4
371,795 - GFF2319 0.41 -1.1
371,795 - GFF2319 0.41 +0.7
371,923 + GFF2319 0.61 +0.1
371,923 + GFF2319 0.61 -0.3
371,923 + GFF2319 0.61 -0.1
371,923 + GFF2319 0.61 -1.0
371,924 - GFF2319 0.61 -0.4
371,924 - GFF2319 0.61 -0.4
371,924 - GFF2319 0.61 -0.2
372,186 + +0.1
372,187 - +0.5
372,187 - -0.2
372,187 - -0.4
372,663 + GFF2320 0.72 +0.4
372,663 + GFF2320 0.72 +0.7
372,664 - GFF2320 0.72 -0.3
372,718 - GFF2320 0.80 +0.1
372,718 - GFF2320 0.80 +0.6
372,718 - GFF2320 0.80 +0.2
372,718 - GFF2320 0.80 -0.0
372,843 + -0.5
372,843 + -0.7
372,843 + +0.1
372,844 - -0.3
372,844 - +0.4
372,844 - -0.6

Or see this region's nucleotide sequence