Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2178 and GFF2179 are separated by 299 nucleotides GFF2179 and GFF2180 overlap by 7 nucleotides GFF2180 and GFF2181 are separated by 18 nucleotides
GFF2178 - Methyl-accepting chemotaxis sensor/transducer protein, at 231,656 to 233,323
GFF2178
GFF2179 - hypothetical protein, at 233,623 to 234,042
GFF2179
GFF2180 - hypothetical protein, at 234,036 to 234,383
GFF2180
GFF2181 - no description, at 234,402 to 234,650
GFF2181
Position (kb) 233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.857 kb on + strand, within GFF2178 at 232.857 kb on + strand, within GFF2178 at 232.858 kb on - strand, within GFF2178 at 232.858 kb on - strand, within GFF2178 at 233.016 kb on + strand, within GFF2178 at 233.016 kb on + strand, within GFF2178 at 233.016 kb on + strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.094 kb on + strand, within GFF2178 at 233.094 kb on + strand, within GFF2178 at 233.094 kb on + strand, within GFF2178 at 233.095 kb on - strand, within GFF2178 at 233.095 kb on - strand, within GFF2178 at 233.392 kb on + strand at 233.392 kb on + strand at 233.392 kb on + strand at 233.393 kb on - strand at 233.393 kb on - strand at 233.396 kb on + strand at 233.396 kb on + strand at 233.396 kb on + strand at 233.396 kb on + strand at 233.397 kb on - strand at 233.529 kb on + strand at 233.556 kb on + strand at 233.556 kb on + strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.666 kb on - strand, within GFF2179 at 233.695 kb on + strand, within GFF2179 at 233.695 kb on + strand, within GFF2179 at 234.004 kb on + strand at 234.004 kb on + strand at 234.004 kb on + strand at 234.004 kb on + strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.123 kb on + strand, within GFF2180 at 234.123 kb on + strand, within GFF2180 at 234.123 kb on + strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.339 kb on + strand, within GFF2180 at 234.339 kb on + strand, within GFF2180 at 234.340 kb on - strand, within GFF2180 at 234.340 kb on - strand, within GFF2180 at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.370 kb on - strand at 234.370 kb on - strand at 234.370 kb on - strand at 234.404 kb on - strand at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.550 kb on + strand, within GFF2181 at 234.550 kb on + strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.612 kb on + strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.633 kb on + strand at 234.633 kb on + strand at 234.633 kb on + strand at 234.633 kb on + strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.636 kb on - strand at 234.636 kb on - strand at 234.636 kb on - strand at 234.864 kb on + strand at 234.865 kb on - strand at 234.869 kb on + strand at 234.869 kb on + strand at 234.870 kb on - strand at 234.870 kb on - strand at 234.910 kb on + strand at 234.910 kb on + strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.930 kb on + strand at 234.930 kb on + strand at 234.930 kb on + strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.976 kb on + strand at 234.982 kb on - strand at 235.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 232,857 + GFF2178 0.72 +0.3 232,857 + GFF2178 0.72 +0.1 232,858 - GFF2178 0.72 +1.1 232,858 - GFF2178 0.72 +0.3 233,016 + GFF2178 0.82 +0.9 233,016 + GFF2178 0.82 -0.4 233,016 + GFF2178 0.82 -0.2 233,017 - GFF2178 0.82 +0.3 233,017 - GFF2178 0.82 -0.9 233,017 - GFF2178 0.82 -0.8 233,017 - GFF2178 0.82 +0.1 233,017 - GFF2178 0.82 -1.4 233,094 + GFF2178 0.86 +0.1 233,094 + GFF2178 0.86 -2.3 233,094 + GFF2178 0.86 +2.0 233,095 - GFF2178 0.86 -0.4 233,095 - GFF2178 0.86 -1.6 233,392 + -0.8 233,392 + -0.5 233,392 + +0.1 233,393 - -0.4 233,393 - -0.2 233,396 + -2.1 233,396 + -0.8 233,396 + -0.9 233,396 + -0.6 233,397 - -0.0 233,529 + -0.0 233,556 + -0.4 233,556 + -1.3 233,557 - -0.1 233,557 - +0.3 233,557 - -0.6 233,557 - +0.5 233,666 - GFF2179 0.10 -0.7 233,695 + GFF2179 0.17 -0.3 233,695 + GFF2179 0.17 -0.6 234,004 + +0.5 234,004 + +0.4 234,004 + +0.5 234,004 + -0.4 234,005 - +0.3 234,005 - -0.7 234,005 - -0.4 234,005 - +1.1 234,123 + GFF2180 0.25 -0.5 234,123 + GFF2180 0.25 +0.0 234,123 + GFF2180 0.25 +0.7 234,124 - GFF2180 0.25 -0.0 234,124 - GFF2180 0.25 -0.1 234,124 - GFF2180 0.25 -0.5 234,313 + GFF2180 0.80 -0.8 234,313 + GFF2180 0.80 +0.7 234,313 + GFF2180 0.80 +0.1 234,313 + GFF2180 0.80 +1.7 234,313 + GFF2180 0.80 +1.1 234,314 - GFF2180 0.80 -0.1 234,314 - GFF2180 0.80 +0.4 234,314 - GFF2180 0.80 +0.6 234,314 - GFF2180 0.80 -0.8 234,314 - GFF2180 0.80 -0.7 234,339 + GFF2180 0.87 +0.5 234,339 + GFF2180 0.87 -0.2 234,340 - GFF2180 0.87 -0.1 234,340 - GFF2180 0.87 -0.7 234,369 + -1.5 234,369 + -0.5 234,369 + -0.2 234,369 + +0.1 234,369 + -1.5 234,369 + +1.1 234,369 + -0.5 234,370 - -0.3 234,370 - -0.4 234,370 - +0.0 234,404 - -0.6 234,535 + GFF2181 0.53 +0.7 234,535 + GFF2181 0.53 -0.4 234,535 + GFF2181 0.53 -0.3 234,535 + GFF2181 0.53 +0.2 234,535 + GFF2181 0.53 -0.1 234,535 + GFF2181 0.53 -0.5 234,536 - GFF2181 0.54 +0.1 234,536 - GFF2181 0.54 -0.5 234,536 - GFF2181 0.54 -0.4 234,536 - GFF2181 0.54 +0.1 234,536 - GFF2181 0.54 -0.3 234,550 + GFF2181 0.59 -0.4 234,550 + GFF2181 0.59 +1.1 234,551 - GFF2181 0.60 +0.5 234,551 - GFF2181 0.60 -0.9 234,551 - GFF2181 0.60 -0.1 234,551 - GFF2181 0.60 +0.2 234,612 + GFF2181 0.84 -0.9 234,613 - GFF2181 0.85 -0.4 234,613 - GFF2181 0.85 -0.3 234,613 - GFF2181 0.85 -0.8 234,633 + -0.0 234,633 + -0.1 234,633 + -0.1 234,633 + -1.3 234,634 - +0.6 234,634 - -0.1 234,634 - -0.2 234,634 - -0.4 234,634 - +0.7 234,634 - -0.6 234,636 - -0.1 234,636 - +0.5 234,636 - -0.0 234,864 + -1.4 234,865 - -0.5 234,869 + +0.5 234,869 + -0.6 234,870 - -2.1 234,870 - +0.1 234,910 + -0.4 234,910 + -0.9 234,911 - -0.2 234,911 - +2.0 234,911 - -1.6 234,911 - -0.3 234,930 + -0.3 234,930 + -0.3 234,930 + +1.4 234,931 - -0.1 234,931 - +0.5 234,931 - -0.4 234,931 - -0.8 234,931 - -0.2 234,931 - -0.2 234,976 + -0.4 234,982 - +0.7 235,002 + -0.6
Or see this region's nucleotide sequence