Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF209 and GFF210 are separated by 128 nucleotides GFF210 and GFF211 are separated by 19 nucleotides GFF211 and GFF212 overlap by 1 nucleotides GFF212 and GFF213 are separated by 63 nucleotides
GFF209 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain, at 235,542 to 237,011
GFF209
GFF210 - Putative transmembrane protein, at 237,140 to 237,673
GFF210
GFF211 - protein of unknown function UPF0125, at 237,693 to 238,028
GFF211
GFF212 - Ribosome association toxin RatA, at 238,028 to 238,474
GFF212
GFF213 - tmRNA-binding protein SmpB, at 238,538 to 239,014
GFF213
Position (kb) 237
238 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 237.037 kb on + strand at 237.037 kb on + strand at 237.037 kb on + strand at 237.037 kb on + strand at 237.038 kb on - strand at 237.038 kb on - strand at 237.117 kb on + strand at 237.128 kb on + strand at 237.128 kb on + strand at 237.162 kb on + strand at 237.162 kb on + strand at 237.162 kb on + strand at 237.163 kb on - strand at 237.163 kb on - strand at 237.294 kb on + strand, within GFF210 at 237.294 kb on + strand, within GFF210 at 237.295 kb on - strand, within GFF210 at 237.671 kb on + strand at 237.671 kb on + strand at 237.671 kb on + strand at 237.671 kb on + strand at 237.671 kb on + strand at 237.672 kb on - strand at 237.672 kb on - strand at 237.672 kb on - strand at 237.672 kb on - strand at 237.672 kb on - strand at 237.672 kb on - strand at 237.698 kb on - strand at 237.698 kb on - strand at 237.746 kb on + strand, within GFF211 at 237.746 kb on + strand, within GFF211 at 237.747 kb on - strand, within GFF211 at 237.747 kb on - strand, within GFF211 at 237.747 kb on - strand, within GFF211 at 238.041 kb on + strand at 238.041 kb on + strand at 238.041 kb on + strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.042 kb on - strand at 238.144 kb on - strand, within GFF212 at 238.395 kb on + strand, within GFF212 at 238.395 kb on + strand, within GFF212 at 238.396 kb on - strand, within GFF212 at 238.396 kb on - strand, within GFF212 at 238.396 kb on - strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.422 kb on + strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.423 kb on - strand, within GFF212 at 238.440 kb on + strand at 238.474 kb on + strand at 238.474 kb on + strand at 238.474 kb on + strand at 238.504 kb on + strand at 238.504 kb on + strand at 238.504 kb on + strand at 238.504 kb on + strand at 238.504 kb on + strand at 238.504 kb on + strand at 238.505 kb on - strand at 238.505 kb on - strand at 238.505 kb on - strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.558 kb on + strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.559 kb on - strand at 238.596 kb on - strand, within GFF213 at 238.596 kb on - strand, within GFF213 at 238.596 kb on - strand, within GFF213 at 238.601 kb on + strand, within GFF213 at 238.601 kb on + strand, within GFF213 at 238.601 kb on + strand, within GFF213 at 238.602 kb on - strand, within GFF213 at 238.602 kb on - strand, within GFF213 at 238.602 kb on - strand, within GFF213
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 237,037 + -0.3 237,037 + -0.1 237,037 + +0.7 237,037 + -0.4 237,038 - +1.0 237,038 - -0.9 237,117 + -0.7 237,128 + -0.8 237,128 + -0.7 237,162 + -0.1 237,162 + -1.5 237,162 + +0.3 237,163 - -0.5 237,163 - -0.4 237,294 + GFF210 0.29 -0.5 237,294 + GFF210 0.29 -1.7 237,295 - GFF210 0.29 -0.4 237,671 + -0.8 237,671 + +0.8 237,671 + -0.0 237,671 + -0.8 237,671 + -0.0 237,672 - -1.3 237,672 - -1.1 237,672 - +0.5 237,672 - -0.2 237,672 - -0.1 237,672 - -0.6 237,698 - +0.4 237,698 - -0.5 237,746 + GFF211 0.16 -0.3 237,746 + GFF211 0.16 -0.0 237,747 - GFF211 0.16 +0.0 237,747 - GFF211 0.16 -0.2 237,747 - GFF211 0.16 -0.3 238,041 + +0.8 238,041 + -0.2 238,041 + -1.5 238,042 - -1.2 238,042 - -0.6 238,042 - -0.6 238,042 - -0.4 238,042 - -0.3 238,042 - -0.0 238,042 - -1.5 238,042 - -1.7 238,042 - -0.1 238,042 - -0.3 238,144 - GFF212 0.26 -0.9 238,395 + GFF212 0.82 +0.9 238,395 + GFF212 0.82 -1.6 238,396 - GFF212 0.82 +0.3 238,396 - GFF212 0.82 +0.7 238,396 - GFF212 0.82 -1.5 238,422 + GFF212 0.88 -1.5 238,422 + GFF212 0.88 -0.0 238,422 + GFF212 0.88 -0.1 238,422 + GFF212 0.88 -0.8 238,422 + GFF212 0.88 +0.3 238,422 + GFF212 0.88 -1.3 238,422 + GFF212 0.88 -0.7 238,422 + GFF212 0.88 -1.7 238,422 + GFF212 0.88 -0.1 238,422 + GFF212 0.88 +0.0 238,422 + GFF212 0.88 -1.3 238,422 + GFF212 0.88 -1.0 238,422 + GFF212 0.88 -1.3 238,422 + GFF212 0.88 -1.4 238,422 + GFF212 0.88 +1.0 238,422 + GFF212 0.88 -0.8 238,422 + GFF212 0.88 -0.6 238,422 + GFF212 0.88 -0.6 238,423 - GFF212 0.88 -2.9 238,423 - GFF212 0.88 -1.8 238,423 - GFF212 0.88 -0.9 238,423 - GFF212 0.88 +0.3 238,423 - GFF212 0.88 -1.5 238,423 - GFF212 0.88 -1.0 238,423 - GFF212 0.88 -0.9 238,423 - GFF212 0.88 -0.5 238,423 - GFF212 0.88 +0.4 238,423 - GFF212 0.88 -0.3 238,423 - GFF212 0.88 -1.3 238,423 - GFF212 0.88 +0.4 238,423 - GFF212 0.88 -0.9 238,423 - GFF212 0.88 +0.4 238,423 - GFF212 0.88 -1.4 238,423 - GFF212 0.88 -0.3 238,423 - GFF212 0.88 -0.4 238,423 - GFF212 0.88 -1.3 238,423 - GFF212 0.88 -1.6 238,440 + -0.7 238,474 + -0.4 238,474 + +0.4 238,474 + -2.2 238,504 + -1.9 238,504 + -2.2 238,504 + +0.6 238,504 + +0.1 238,504 + +0.1 238,504 + -0.2 238,505 - +0.3 238,505 - +1.3 238,505 - -0.5 238,558 + -0.3 238,558 + -0.5 238,558 + -0.1 238,558 + +0.6 238,558 + -0.9 238,558 + -1.2 238,558 + -0.8 238,558 + -1.1 238,558 + -0.8 238,559 - -1.5 238,559 - -1.0 238,559 - +1.1 238,559 - -1.5 238,559 - -1.0 238,559 - -0.2 238,559 - -1.4 238,559 - -0.6 238,596 - GFF213 0.12 -0.9 238,596 - GFF213 0.12 -0.8 238,596 - GFF213 0.12 -0.3 238,601 + GFF213 0.13 -1.0 238,601 + GFF213 0.13 -0.5 238,601 + GFF213 0.13 +0.1 238,602 - GFF213 0.13 +0.4 238,602 - GFF213 0.13 +0.3 238,602 - GFF213 0.13 -0.5
Or see this region's nucleotide sequence