Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF203 and GFF204 are separated by 247 nucleotides GFF204 and GFF205 are separated by 42 nucleotides GFF205 and GFF206 are separated by 277 nucleotides
GFF203 - hypothetical protein, at 230,803 to 231,339
GFF203
GFF204 - hypothetical protein, at 231,587 to 232,216
GFF204
GFF205 - Nitroreductase family protein, at 232,259 to 232,879
GFF205
GFF206 - GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2), at 233,157 to 234,773
GFF206
Position (kb) 232
233 Strain fitness (log2 ratio) -1
0
1
2
3 at 231.686 kb on + strand, within GFF204 at 231.686 kb on + strand, within GFF204 at 231.687 kb on - strand, within GFF204 at 231.687 kb on - strand, within GFF204 at 231.687 kb on - strand, within GFF204 at 231.716 kb on + strand, within GFF204 at 231.716 kb on + strand, within GFF204 at 231.717 kb on - strand, within GFF204 at 231.717 kb on - strand, within GFF204 at 231.717 kb on - strand, within GFF204 at 231.788 kb on + strand, within GFF204 at 231.788 kb on + strand, within GFF204 at 231.788 kb on + strand, within GFF204 at 231.788 kb on + strand, within GFF204 at 231.788 kb on + strand, within GFF204 at 231.788 kb on + strand, within GFF204 at 231.789 kb on - strand, within GFF204 at 231.789 kb on - strand, within GFF204 at 231.789 kb on - strand, within GFF204 at 231.789 kb on - strand, within GFF204 at 231.789 kb on - strand, within GFF204 at 231.789 kb on - strand, within GFF204 at 231.789 kb on - strand, within GFF204 at 231.843 kb on - strand, within GFF204 at 231.890 kb on + strand, within GFF204 at 231.891 kb on - strand, within GFF204 at 231.891 kb on - strand, within GFF204 at 231.891 kb on - strand, within GFF204 at 231.891 kb on - strand, within GFF204 at 232.143 kb on - strand, within GFF204 at 232.143 kb on - strand, within GFF204 at 232.148 kb on + strand, within GFF204 at 232.148 kb on + strand, within GFF204 at 232.149 kb on - strand, within GFF204 at 232.149 kb on - strand, within GFF204 at 232.149 kb on - strand, within GFF204 at 232.214 kb on + strand at 232.214 kb on + strand at 232.214 kb on + strand at 232.215 kb on - strand at 232.215 kb on - strand at 232.215 kb on - strand at 232.215 kb on - strand at 232.215 kb on - strand at 232.371 kb on + strand, within GFF205 at 232.371 kb on + strand, within GFF205 at 232.371 kb on + strand, within GFF205 at 232.371 kb on + strand, within GFF205 at 232.372 kb on - strand, within GFF205 at 232.372 kb on - strand, within GFF205 at 232.372 kb on - strand, within GFF205 at 232.434 kb on + strand, within GFF205 at 232.434 kb on + strand, within GFF205 at 232.434 kb on + strand, within GFF205 at 232.435 kb on - strand, within GFF205 at 232.467 kb on + strand, within GFF205 at 232.468 kb on - strand, within GFF205 at 232.468 kb on - strand, within GFF205 at 233.068 kb on + strand at 233.069 kb on - strand at 233.069 kb on - strand at 233.104 kb on + strand at 233.148 kb on + strand at 233.148 kb on + strand at 233.149 kb on - strand at 233.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 231,686 + GFF204 0.16 +0.9 231,686 + GFF204 0.16 -0.3 231,687 - GFF204 0.16 -0.4 231,687 - GFF204 0.16 -0.4 231,687 - GFF204 0.16 +1.3 231,716 + GFF204 0.20 +1.5 231,716 + GFF204 0.20 -0.2 231,717 - GFF204 0.21 -0.2 231,717 - GFF204 0.21 +1.0 231,717 - GFF204 0.21 +0.5 231,788 + GFF204 0.32 -0.6 231,788 + GFF204 0.32 +0.3 231,788 + GFF204 0.32 -0.3 231,788 + GFF204 0.32 +0.3 231,788 + GFF204 0.32 -0.0 231,788 + GFF204 0.32 +1.3 231,789 - GFF204 0.32 -1.3 231,789 - GFF204 0.32 -0.0 231,789 - GFF204 0.32 -0.3 231,789 - GFF204 0.32 +1.0 231,789 - GFF204 0.32 -0.7 231,789 - GFF204 0.32 +0.5 231,789 - GFF204 0.32 +0.3 231,843 - GFF204 0.41 +1.0 231,890 + GFF204 0.48 +1.0 231,891 - GFF204 0.48 -0.1 231,891 - GFF204 0.48 +0.9 231,891 - GFF204 0.48 -0.6 231,891 - GFF204 0.48 -0.6 232,143 - GFF204 0.88 -0.8 232,143 - GFF204 0.88 +0.9 232,148 + GFF204 0.89 -0.1 232,148 + GFF204 0.89 +0.0 232,149 - GFF204 0.89 -0.5 232,149 - GFF204 0.89 +0.1 232,149 - GFF204 0.89 -1.0 232,214 + -0.5 232,214 + -1.5 232,214 + -0.6 232,215 - +0.5 232,215 - -0.1 232,215 - -1.0 232,215 - +0.1 232,215 - +0.1 232,371 + GFF205 0.18 -0.0 232,371 + GFF205 0.18 -0.3 232,371 + GFF205 0.18 -0.2 232,371 + GFF205 0.18 -1.3 232,372 - GFF205 0.18 -1.1 232,372 - GFF205 0.18 -1.2 232,372 - GFF205 0.18 +0.3 232,434 + GFF205 0.28 +0.7 232,434 + GFF205 0.28 -0.6 232,434 + GFF205 0.28 -1.4 232,435 - GFF205 0.28 +0.2 232,467 + GFF205 0.33 -0.7 232,468 - GFF205 0.34 -0.4 232,468 - GFF205 0.34 +0.7 233,068 + +0.5 233,069 - -0.2 233,069 - +0.3 233,104 + +2.9 233,148 + -1.3 233,148 + +0.7 233,149 - -0.7 233,149 - -1.0
Or see this region's nucleotide sequence