Strain Fitness in Variovorax sp. SCN45 around GFF2021

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2020 and GFF2021 are separated by 127 nucleotidesGFF2021 and GFF2022 overlap by 4 nucleotides GFF2020 - BUG/TctC family periplasmic protein, at 63,553 to 64,575 GFF2020 GFF2021 - FIG00538369: hypothetical protein, at 64,703 to 65,926 GFF2021 GFF2022 - Acyl-CoA dehydrogenase, at 65,923 to 67,092 GFF2022 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1at 63.865 kb on + strand, within GFF2020at 63.865 kb on + strand, within GFF2020at 63.866 kb on - strand, within GFF2020at 63.866 kb on - strand, within GFF2020at 63.866 kb on - strand, within GFF2020at 63.866 kb on - strand, within GFF2020at 63.931 kb on + strand, within GFF2020at 63.932 kb on - strand, within GFF2020at 63.932 kb on - strand, within GFF2020at 64.069 kb on + strand, within GFF2020at 64.069 kb on + strand, within GFF2020at 64.069 kb on + strand, within GFF2020at 64.069 kb on + strand, within GFF2020at 64.070 kb on - strand, within GFF2020at 64.070 kb on - strand, within GFF2020at 64.070 kb on - strand, within GFF2020at 64.070 kb on - strand, within GFF2020at 64.070 kb on - strand, within GFF2020at 64.150 kb on + strand, within GFF2020at 64.150 kb on + strand, within GFF2020at 64.150 kb on + strand, within GFF2020at 64.150 kb on + strand, within GFF2020at 64.150 kb on + strand, within GFF2020at 64.151 kb on - strand, within GFF2020at 64.151 kb on - strand, within GFF2020at 64.633 kb on + strandat 64.701 kb on + strandat 64.708 kb on + strandat 64.708 kb on + strandat 64.708 kb on + strandat 64.708 kb on + strandat 64.708 kb on + strandat 64.708 kb on + strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.709 kb on - strandat 64.769 kb on + strandat 64.871 kb on - strand, within GFF2021at 64.988 kb on + strand, within GFF2021at 64.989 kb on - strand, within GFF2021at 64.989 kb on - strand, within GFF2021at 65.031 kb on - strand, within GFF2021at 65.066 kb on + strand, within GFF2021at 65.066 kb on + strand, within GFF2021at 65.067 kb on - strand, within GFF2021at 65.085 kb on - strand, within GFF2021at 65.102 kb on + strand, within GFF2021at 65.102 kb on + strand, within GFF2021at 65.420 kb on + strand, within GFF2021at 65.421 kb on - strand, within GFF2021at 65.456 kb on + strand, within GFF2021at 65.457 kb on - strand, within GFF2021at 65.567 kb on + strand, within GFF2021at 65.567 kb on + strand, within GFF2021at 65.567 kb on + strand, within GFF2021at 65.567 kb on + strand, within GFF2021at 65.568 kb on - strand, within GFF2021at 65.568 kb on - strand, within GFF2021at 65.568 kb on - strand, within GFF2021at 65.568 kb on - strand, within GFF2021at 65.708 kb on + strand, within GFF2021at 66.001 kb on + strandat 66.002 kb on - strandat 66.493 kb on + strand, within GFF2022at 66.493 kb on + strand, within GFF2022at 66.494 kb on - strand, within GFF2022at 66.494 kb on - strand, within GFF2022at 66.494 kb on - strand, within GFF2022at 66.637 kb on + strand, within GFF2022at 66.637 kb on + strand, within GFF2022at 66.637 kb on + strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.638 kb on - strand, within GFF2022at 66.727 kb on + strand, within GFF2022at 66.728 kb on - strand, within GFF2022at 66.728 kb on - strand, within GFF2022at 66.728 kb on - strand, within GFF2022at 66.853 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.898 kb on + strand, within GFF2022at 66.899 kb on - strand, within GFF2022at 66.899 kb on - strand, within GFF2022

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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63,865 + GFF2020 0.30 -0.4
63,865 + GFF2020 0.30 +0.7
63,866 - GFF2020 0.31 +0.4
63,866 - GFF2020 0.31 -1.5
63,866 - GFF2020 0.31 -0.4
63,866 - GFF2020 0.31 +0.7
63,931 + GFF2020 0.37 -0.2
63,932 - GFF2020 0.37 -0.5
63,932 - GFF2020 0.37 +0.7
64,069 + GFF2020 0.50 -0.3
64,069 + GFF2020 0.50 -2.0
64,069 + GFF2020 0.50 +0.1
64,069 + GFF2020 0.50 -0.6
64,070 - GFF2020 0.51 -0.8
64,070 - GFF2020 0.51 -1.6
64,070 - GFF2020 0.51 -0.0
64,070 - GFF2020 0.51 -1.6
64,070 - GFF2020 0.51 -0.3
64,150 + GFF2020 0.58 +0.4
64,150 + GFF2020 0.58 -0.4
64,150 + GFF2020 0.58 -1.2
64,150 + GFF2020 0.58 -0.4
64,150 + GFF2020 0.58 -0.5
64,151 - GFF2020 0.58 +0.2
64,151 - GFF2020 0.58 -0.6
64,633 + -0.4
64,701 + +0.3
64,708 + -0.1
64,708 + -0.8
64,708 + +0.2
64,708 + -0.5
64,708 + +0.0
64,708 + -0.2
64,709 - -0.3
64,709 - -0.4
64,709 - -0.0
64,709 - -0.3
64,709 - -0.7
64,709 - -0.1
64,709 - +0.8
64,709 - -1.5
64,709 - -1.0
64,709 - -0.1
64,709 - -0.1
64,709 - -0.3
64,769 + +0.7
64,871 - GFF2021 0.14 +0.5
64,988 + GFF2021 0.23 -0.1
64,989 - GFF2021 0.23 +0.4
64,989 - GFF2021 0.23 -0.8
65,031 - GFF2021 0.27 -0.5
65,066 + GFF2021 0.30 +0.2
65,066 + GFF2021 0.30 +0.3
65,067 - GFF2021 0.30 -0.0
65,085 - GFF2021 0.31 -0.7
65,102 + GFF2021 0.33 -1.4
65,102 + GFF2021 0.33 -0.4
65,420 + GFF2021 0.59 +1.0
65,421 - GFF2021 0.59 -0.1
65,456 + GFF2021 0.62 +0.3
65,457 - GFF2021 0.62 -0.1
65,567 + GFF2021 0.71 +0.2
65,567 + GFF2021 0.71 +0.5
65,567 + GFF2021 0.71 +0.1
65,567 + GFF2021 0.71 +0.0
65,568 - GFF2021 0.71 -0.3
65,568 - GFF2021 0.71 -0.4
65,568 - GFF2021 0.71 -0.6
65,568 - GFF2021 0.71 +0.4
65,708 + GFF2021 0.82 -0.5
66,001 + -0.6
66,002 - -0.3
66,493 + GFF2022 0.49 +0.4
66,493 + GFF2022 0.49 +0.4
66,494 - GFF2022 0.49 -0.4
66,494 - GFF2022 0.49 -0.6
66,494 - GFF2022 0.49 +0.0
66,637 + GFF2022 0.61 -0.9
66,637 + GFF2022 0.61 -1.1
66,637 + GFF2022 0.61 -0.6
66,638 - GFF2022 0.61 -0.4
66,638 - GFF2022 0.61 -0.2
66,638 - GFF2022 0.61 +0.2
66,638 - GFF2022 0.61 +0.7
66,727 + GFF2022 0.69 -1.3
66,728 - GFF2022 0.69 +0.7
66,728 - GFF2022 0.69 +0.2
66,728 - GFF2022 0.69 -0.1
66,853 + GFF2022 0.79 +0.7
66,898 + GFF2022 0.83 +0.2
66,898 + GFF2022 0.83 -0.6
66,898 + GFF2022 0.83 -0.8
66,898 + GFF2022 0.83 -0.7
66,898 + GFF2022 0.83 -0.6
66,899 - GFF2022 0.83 -0.1
66,899 - GFF2022 0.83 +0.4

Or see this region's nucleotide sequence