Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1983 and GFF1984 overlap by 1 nucleotides GFF1984 and GFF1985 are separated by 17 nucleotides GFF1985 and GFF1986 are separated by 21 nucleotides GFF1986 and GFF1987 are separated by 68 nucleotides
GFF1983 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase (EC 3.1.3.82); Histidinol-phosphatase (EC 3.1.3.15), at 25,408 to 25,986
GFF1983
GFF1984 - Phospholipid and glycerol acyltransferase (EC 2.3.1.51), at 25,986 to 26,756
GFF1984
GFF1985 - Zinc metalloprotease, at 26,774 to 27,754
GFF1985
GFF1986 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 27,776 to 28,546
GFF1986
GFF1987 - Pseudouridine synthase (EC 4.2.1.70), PA2043 type, at 28,615 to 29,535
GFF1987
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 26.283 kb on + strand, within GFF1984 at 26.284 kb on - strand, within GFF1984 at 26.307 kb on + strand, within GFF1984 at 26.307 kb on + strand, within GFF1984 at 26.307 kb on + strand, within GFF1984 at 26.308 kb on - strand, within GFF1984 at 26.308 kb on - strand, within GFF1984 at 26.484 kb on + strand, within GFF1984 at 26.713 kb on - strand at 26.900 kb on - strand, within GFF1985 at 27.056 kb on + strand, within GFF1985 at 27.614 kb on + strand, within GFF1985 at 27.614 kb on + strand, within GFF1985 at 27.615 kb on - strand, within GFF1985 at 27.615 kb on - strand, within GFF1985 at 27.701 kb on + strand at 27.701 kb on + strand at 27.828 kb on + strand at 27.828 kb on + strand at 27.829 kb on - strand at 27.829 kb on - strand at 27.829 kb on - strand at 27.829 kb on - strand at 27.852 kb on + strand at 27.852 kb on + strand at 27.852 kb on + strand at 27.852 kb on + strand at 27.852 kb on + strand at 27.852 kb on + strand at 27.852 kb on + strand at 27.852 kb on + strand at 27.853 kb on - strand, within GFF1986 at 27.853 kb on - strand, within GFF1986 at 27.853 kb on - strand, within GFF1986 at 28.059 kb on + strand, within GFF1986 at 28.065 kb on + strand, within GFF1986 at 28.066 kb on - strand, within GFF1986 at 28.066 kb on - strand, within GFF1986 at 28.066 kb on - strand, within GFF1986 at 28.305 kb on + strand, within GFF1986 at 28.306 kb on - strand, within GFF1986 at 28.431 kb on + strand, within GFF1986 at 28.432 kb on - strand, within GFF1986 at 28.432 kb on - strand, within GFF1986 at 28.432 kb on - strand, within GFF1986 at 28.590 kb on + strand at 28.590 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 26,283 + GFF1984 0.39 -1.8 26,284 - GFF1984 0.39 -1.3 26,307 + GFF1984 0.42 -0.6 26,307 + GFF1984 0.42 +0.1 26,307 + GFF1984 0.42 -1.6 26,308 - GFF1984 0.42 -0.4 26,308 - GFF1984 0.42 +1.1 26,484 + GFF1984 0.65 -0.3 26,713 - -0.6 26,900 - GFF1985 0.13 -0.5 27,056 + GFF1985 0.29 -2.9 27,614 + GFF1985 0.86 -0.1 27,614 + GFF1985 0.86 -0.4 27,615 - GFF1985 0.86 -0.3 27,615 - GFF1985 0.86 -0.1 27,701 + -0.3 27,701 + -0.5 27,828 + +0.4 27,828 + -1.3 27,829 - +0.9 27,829 - +0.4 27,829 - -0.9 27,829 - -0.6 27,852 + -0.8 27,852 + +0.4 27,852 + -1.8 27,852 + +0.4 27,852 + +0.0 27,852 + -0.0 27,852 + +0.0 27,852 + +2.1 27,853 - GFF1986 0.10 +0.2 27,853 - GFF1986 0.10 -1.5 27,853 - GFF1986 0.10 +0.1 28,059 + GFF1986 0.37 +0.1 28,065 + GFF1986 0.37 +0.9 28,066 - GFF1986 0.38 -0.1 28,066 - GFF1986 0.38 -0.9 28,066 - GFF1986 0.38 +1.7 28,305 + GFF1986 0.69 -0.7 28,306 - GFF1986 0.69 +0.2 28,431 + GFF1986 0.85 +0.0 28,432 - GFF1986 0.85 -0.4 28,432 - GFF1986 0.85 +0.3 28,432 - GFF1986 0.85 -0.6 28,590 + -0.1 28,590 + -0.1
Or see this region's nucleotide sequence