Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1920 and GFF1921 overlap by 4 nucleotides GFF1921 and GFF1922 overlap by 4 nucleotides GFF1922 and GFF1923 are separated by 83 nucleotides
GFF1920 - Cysteine dioxygenase (EC 1.13.11.20), at 600,472 to 601,077
GFF1920
GFF1921 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 601,074 to 602,063
GFF1921
GFF1922 - Acyl-CoA dehydrogenase, at 602,060 to 603,304
GFF1922
GFF1923 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 603,388 to 604,416
GFF1923
Position (kb) 602
603
604 Strain fitness (log2 ratio) -2
-1
0
1 at 601.274 kb on - strand, within GFF1921 at 601.285 kb on + strand, within GFF1921 at 601.286 kb on - strand, within GFF1921 at 601.286 kb on - strand, within GFF1921 at 601.468 kb on + strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.472 kb on - strand, within GFF1921 at 601.472 kb on - strand, within GFF1921 at 601.595 kb on - strand, within GFF1921 at 601.595 kb on - strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.604 kb on - strand, within GFF1921 at 601.604 kb on - strand, within GFF1921 at 601.862 kb on - strand, within GFF1921 at 602.131 kb on + strand at 602.131 kb on + strand at 602.131 kb on + strand at 602.132 kb on - strand at 602.132 kb on - strand at 602.257 kb on - strand, within GFF1922 at 602.478 kb on + strand, within GFF1922 at 602.478 kb on + strand, within GFF1922 at 602.788 kb on - strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 603.091 kb on - strand, within GFF1922 at 603.358 kb on - strand at 603.549 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.608 kb on - strand, within GFF1923 at 603.841 kb on + strand, within GFF1923 at 603.842 kb on - strand, within GFF1923 at 603.842 kb on - strand, within GFF1923 at 603.865 kb on + strand, within GFF1923 at 603.866 kb on - strand, within GFF1923 at 603.868 kb on + strand, within GFF1923 at 603.868 kb on + strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.988 kb on + strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.995 kb on - strand, within GFF1923 at 604.078 kb on + strand, within GFF1923 at 604.078 kb on + strand, within GFF1923 at 604.079 kb on - strand, within GFF1923 at 604.079 kb on - strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.187 kb on - strand, within GFF1923 at 604.187 kb on - strand, within GFF1923
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 601,274 - GFF1921 0.20 -0.6 601,285 + GFF1921 0.21 -0.3 601,286 - GFF1921 0.21 -0.3 601,286 - GFF1921 0.21 -0.5 601,468 + GFF1921 0.40 -0.6 601,469 - GFF1921 0.40 +0.0 601,469 - GFF1921 0.40 -0.0 601,469 - GFF1921 0.40 -0.6 601,469 - GFF1921 0.40 -1.2 601,469 - GFF1921 0.40 -0.7 601,472 - GFF1921 0.40 -0.2 601,472 - GFF1921 0.40 -0.3 601,595 - GFF1921 0.53 +1.7 601,595 - GFF1921 0.53 -0.7 601,603 + GFF1921 0.53 -0.0 601,603 + GFF1921 0.53 -0.3 601,603 + GFF1921 0.53 -0.5 601,604 - GFF1921 0.54 -1.0 601,604 - GFF1921 0.54 +0.3 601,862 - GFF1921 0.80 +0.6 602,131 + +0.0 602,131 + -0.6 602,131 + -0.1 602,132 - +0.7 602,132 - -0.5 602,257 - GFF1922 0.16 -0.5 602,478 + GFF1922 0.34 +0.0 602,478 + GFF1922 0.34 -0.2 602,788 - GFF1922 0.58 -0.0 602,994 + GFF1922 0.75 -0.3 602,994 + GFF1922 0.75 +0.3 602,994 + GFF1922 0.75 -0.4 602,995 - GFF1922 0.75 -0.0 602,995 - GFF1922 0.75 +1.1 602,995 - GFF1922 0.75 -0.4 602,995 - GFF1922 0.75 +0.1 603,091 - GFF1922 0.83 -0.6 603,358 - +1.1 603,549 + GFF1923 0.16 -0.5 603,553 + GFF1923 0.16 +1.7 603,553 + GFF1923 0.16 -0.7 603,553 + GFF1923 0.16 -1.1 603,553 + GFF1923 0.16 +0.0 603,553 + GFF1923 0.16 -0.4 603,553 + GFF1923 0.16 -0.5 603,554 - GFF1923 0.16 -2.0 603,554 - GFF1923 0.16 +0.7 603,554 - GFF1923 0.16 -0.1 603,554 - GFF1923 0.16 +0.2 603,554 - GFF1923 0.16 +0.2 603,608 - GFF1923 0.21 -0.3 603,841 + GFF1923 0.44 +0.7 603,842 - GFF1923 0.44 +0.2 603,842 - GFF1923 0.44 -0.1 603,865 + GFF1923 0.46 +0.4 603,866 - GFF1923 0.46 +1.7 603,868 + GFF1923 0.47 -0.2 603,868 + GFF1923 0.47 -0.6 603,869 - GFF1923 0.47 +1.1 603,869 - GFF1923 0.47 +0.6 603,869 - GFF1923 0.47 -0.1 603,988 + GFF1923 0.58 +0.2 603,989 - GFF1923 0.58 +0.1 603,989 - GFF1923 0.58 +1.7 603,989 - GFF1923 0.58 -0.9 603,989 - GFF1923 0.58 +1.5 603,989 - GFF1923 0.58 -0.1 603,995 - GFF1923 0.59 -0.2 604,078 + GFF1923 0.67 -1.3 604,078 + GFF1923 0.67 +0.7 604,079 - GFF1923 0.67 -1.1 604,079 - GFF1923 0.67 -1.2 604,186 + GFF1923 0.78 -0.0 604,186 + GFF1923 0.78 -0.6 604,186 + GFF1923 0.78 -0.3 604,186 + GFF1923 0.78 -0.6 604,186 + GFF1923 0.78 -0.7 604,186 + GFF1923 0.78 +0.2 604,187 - GFF1923 0.78 -0.3 604,187 - GFF1923 0.78 -0.9
Or see this region's nucleotide sequence