Strain Fitness in Variovorax sp. SCN45 around GFF1903

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1902 and GFF1903 are separated by 267 nucleotidesGFF1903 and GFF1904 are separated by 39 nucleotides GFF1902 - hypothetical protein, at 579,642 to 581,852 GFF1902 GFF1903 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 582,120 to 584,678 GFF1903 GFF1904 - Uncharacterized MFS-type transporter, at 584,718 to 586,010 GFF1904 Position (kb) 582 583 584 585Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 581.193 kb on + strand, within GFF1902at 581.193 kb on + strand, within GFF1902at 581.193 kb on + strand, within GFF1902at 581.194 kb on - strand, within GFF1902at 581.194 kb on - strand, within GFF1902at 581.194 kb on - strand, within GFF1902at 581.194 kb on - strand, within GFF1902at 581.334 kb on + strand, within GFF1902at 581.335 kb on - strand, within GFF1902at 581.376 kb on + strand, within GFF1902at 581.376 kb on + strand, within GFF1902at 581.377 kb on - strand, within GFF1902at 581.377 kb on - strand, within GFF1902at 581.412 kb on + strand, within GFF1902at 581.412 kb on + strand, within GFF1902at 581.412 kb on + strand, within GFF1902at 581.412 kb on + strand, within GFF1902at 581.412 kb on + strand, within GFF1902at 581.413 kb on - strand, within GFF1902at 581.413 kb on - strand, within GFF1902at 581.560 kb on + strand, within GFF1902at 581.995 kb on - strandat 581.995 kb on - strandat 581.995 kb on - strandat 582.075 kb on + strandat 582.076 kb on - strandat 582.076 kb on - strandat 582.285 kb on + strandat 582.285 kb on + strandat 582.285 kb on + strandat 582.285 kb on + strandat 582.285 kb on + strandat 582.286 kb on - strandat 582.286 kb on - strandat 582.286 kb on - strandat 582.286 kb on - strandat 582.286 kb on - strandat 582.286 kb on - strandat 582.287 kb on + strandat 582.287 kb on + strandat 582.288 kb on - strandat 582.288 kb on - strandat 582.288 kb on - strandat 582.298 kb on + strandat 582.420 kb on + strand, within GFF1903at 582.421 kb on - strand, within GFF1903at 582.441 kb on + strand, within GFF1903at 582.609 kb on + strand, within GFF1903at 582.705 kb on + strand, within GFF1903at 582.705 kb on + strand, within GFF1903at 582.705 kb on + strand, within GFF1903at 582.705 kb on + strand, within GFF1903at 582.705 kb on + strand, within GFF1903at 582.706 kb on - strand, within GFF1903at 582.717 kb on + strand, within GFF1903at 582.717 kb on + strand, within GFF1903at 582.717 kb on + strand, within GFF1903at 582.717 kb on + strand, within GFF1903at 582.717 kb on + strand, within GFF1903at 582.717 kb on + strand, within GFF1903at 582.717 kb on + strand, within GFF1903at 582.717 kb on + strand, within GFF1903at 582.718 kb on - strand, within GFF1903at 582.718 kb on - strand, within GFF1903at 582.718 kb on - strand, within GFF1903at 582.742 kb on - strand, within GFF1903at 582.742 kb on - strand, within GFF1903at 582.742 kb on - strand, within GFF1903at 582.999 kb on + strand, within GFF1903at 582.999 kb on + strand, within GFF1903at 582.999 kb on + strand, within GFF1903at 583.173 kb on + strand, within GFF1903at 583.173 kb on + strand, within GFF1903at 583.173 kb on + strand, within GFF1903at 583.173 kb on + strand, within GFF1903at 583.173 kb on + strand, within GFF1903at 583.173 kb on + strand, within GFF1903at 583.173 kb on + strand, within GFF1903at 583.174 kb on - strand, within GFF1903at 583.174 kb on - strand, within GFF1903at 583.174 kb on - strand, within GFF1903at 583.174 kb on - strand, within GFF1903at 583.272 kb on + strand, within GFF1903at 583.273 kb on - strand, within GFF1903at 583.350 kb on + strand, within GFF1903at 583.350 kb on + strand, within GFF1903at 583.351 kb on - strand, within GFF1903at 583.380 kb on + strand, within GFF1903at 583.381 kb on - strand, within GFF1903at 583.381 kb on - strand, within GFF1903at 583.515 kb on + strand, within GFF1903at 583.515 kb on + strand, within GFF1903at 583.728 kb on + strand, within GFF1903at 583.729 kb on - strand, within GFF1903at 583.752 kb on + strand, within GFF1903at 583.753 kb on - strand, within GFF1903at 583.887 kb on + strand, within GFF1903at 583.887 kb on + strand, within GFF1903at 583.887 kb on + strand, within GFF1903at 583.888 kb on - strand, within GFF1903at 584.185 kb on - strand, within GFF1903at 584.185 kb on - strand, within GFF1903at 584.377 kb on - strand, within GFF1903at 584.400 kb on + strand, within GFF1903at 584.400 kb on + strand, within GFF1903at 584.401 kb on - strand, within GFF1903at 584.446 kb on - strandat 584.478 kb on + strandat 584.478 kb on + strandat 584.478 kb on + strandat 584.478 kb on + strandat 584.478 kb on + strandat 584.478 kb on + strandat 584.478 kb on + strandat 584.478 kb on + strandat 584.479 kb on - strandat 584.479 kb on - strandat 584.479 kb on - strandat 584.479 kb on - strandat 584.479 kb on - strandat 584.479 kb on - strandat 584.479 kb on - strandat 584.479 kb on - strandat 584.578 kb on - strandat 584.578 kb on - strandat 584.589 kb on + strandat 584.590 kb on - strandat 584.677 kb on - strandat 584.864 kb on - strand, within GFF1904at 585.199 kb on + strand, within GFF1904at 585.199 kb on + strand, within GFF1904at 585.199 kb on + strand, within GFF1904at 585.199 kb on + strand, within GFF1904at 585.199 kb on + strand, within GFF1904at 585.199 kb on + strand, within GFF1904at 585.200 kb on - strand, within GFF1904at 585.200 kb on - strand, within GFF1904at 585.200 kb on - strand, within GFF1904

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
581,193 + GFF1902 0.70 -0.7
581,193 + GFF1902 0.70 -0.6
581,193 + GFF1902 0.70 +1.0
581,194 - GFF1902 0.70 -0.3
581,194 - GFF1902 0.70 -0.7
581,194 - GFF1902 0.70 -0.2
581,194 - GFF1902 0.70 +0.1
581,334 + GFF1902 0.77 -0.9
581,335 - GFF1902 0.77 -0.3
581,376 + GFF1902 0.78 +0.7
581,376 + GFF1902 0.78 +0.2
581,377 - GFF1902 0.78 -0.2
581,377 - GFF1902 0.78 -0.5
581,412 + GFF1902 0.80 -0.0
581,412 + GFF1902 0.80 +0.6
581,412 + GFF1902 0.80 -0.1
581,412 + GFF1902 0.80 -0.2
581,412 + GFF1902 0.80 +0.1
581,413 - GFF1902 0.80 -0.4
581,413 - GFF1902 0.80 +0.0
581,560 + GFF1902 0.87 -0.6
581,995 - -0.3
581,995 - +0.2
581,995 - +0.5
582,075 + -0.7
582,076 - -1.1
582,076 - +0.1
582,285 + +0.7
582,285 + -0.4
582,285 + -0.9
582,285 + -0.8
582,285 + +0.0
582,286 - +0.4
582,286 - +0.9
582,286 - +0.2
582,286 - -0.4
582,286 - -1.3
582,286 - +1.1
582,287 + -0.3
582,287 + +0.1
582,288 - -0.6
582,288 - +0.5
582,288 - +1.0
582,298 + -0.4
582,420 + GFF1903 0.12 +0.1
582,421 - GFF1903 0.12 +0.1
582,441 + GFF1903 0.13 -0.2
582,609 + GFF1903 0.19 +0.1
582,705 + GFF1903 0.23 -0.5
582,705 + GFF1903 0.23 -0.4
582,705 + GFF1903 0.23 -0.6
582,705 + GFF1903 0.23 +0.7
582,705 + GFF1903 0.23 -0.4
582,706 - GFF1903 0.23 -0.3
582,717 + GFF1903 0.23 -0.3
582,717 + GFF1903 0.23 +0.5
582,717 + GFF1903 0.23 +0.5
582,717 + GFF1903 0.23 +0.7
582,717 + GFF1903 0.23 +0.2
582,717 + GFF1903 0.23 -1.1
582,717 + GFF1903 0.23 -0.2
582,717 + GFF1903 0.23 -1.1
582,718 - GFF1903 0.23 -0.4
582,718 - GFF1903 0.23 -0.4
582,718 - GFF1903 0.23 -0.5
582,742 - GFF1903 0.24 -0.9
582,742 - GFF1903 0.24 +1.0
582,742 - GFF1903 0.24 +0.7
582,999 + GFF1903 0.34 +0.2
582,999 + GFF1903 0.34 +0.8
582,999 + GFF1903 0.34 -1.3
583,173 + GFF1903 0.41 -0.6
583,173 + GFF1903 0.41 +1.7
583,173 + GFF1903 0.41 +1.0
583,173 + GFF1903 0.41 +0.3
583,173 + GFF1903 0.41 -0.3
583,173 + GFF1903 0.41 +0.0
583,173 + GFF1903 0.41 +0.3
583,174 - GFF1903 0.41 -0.0
583,174 - GFF1903 0.41 -0.1
583,174 - GFF1903 0.41 +0.1
583,174 - GFF1903 0.41 +0.1
583,272 + GFF1903 0.45 -0.3
583,273 - GFF1903 0.45 -2.9
583,350 + GFF1903 0.48 +2.1
583,350 + GFF1903 0.48 -0.3
583,351 - GFF1903 0.48 +0.5
583,380 + GFF1903 0.49 +0.6
583,381 - GFF1903 0.49 -0.1
583,381 - GFF1903 0.49 -0.6
583,515 + GFF1903 0.55 +0.2
583,515 + GFF1903 0.55 +0.1
583,728 + GFF1903 0.63 +0.2
583,729 - GFF1903 0.63 +0.1
583,752 + GFF1903 0.64 -0.2
583,753 - GFF1903 0.64 -1.1
583,887 + GFF1903 0.69 -0.2
583,887 + GFF1903 0.69 -0.1
583,887 + GFF1903 0.69 -0.2
583,888 - GFF1903 0.69 -1.6
584,185 - GFF1903 0.81 +1.0
584,185 - GFF1903 0.81 -0.6
584,377 - GFF1903 0.88 -0.3
584,400 + GFF1903 0.89 +0.1
584,400 + GFF1903 0.89 -0.7
584,401 - GFF1903 0.89 -0.0
584,446 - +0.1
584,478 + -0.7
584,478 + +1.5
584,478 + -0.0
584,478 + -0.5
584,478 + -0.8
584,478 + -0.5
584,478 + -1.5
584,478 + -0.7
584,479 - -0.0
584,479 - -2.4
584,479 - -0.3
584,479 - -0.8
584,479 - +0.2
584,479 - -0.8
584,479 - -1.5
584,479 - -0.2
584,578 - -1.4
584,578 - -0.2
584,589 + -0.1
584,590 - -1.0
584,677 - -0.9
584,864 - GFF1904 0.11 -0.0
585,199 + GFF1904 0.37 +1.5
585,199 + GFF1904 0.37 -0.5
585,199 + GFF1904 0.37 +0.3
585,199 + GFF1904 0.37 +0.1
585,199 + GFF1904 0.37 -0.3
585,199 + GFF1904 0.37 -0.2
585,200 - GFF1904 0.37 -0.8
585,200 - GFF1904 0.37 -0.7
585,200 - GFF1904 0.37 +0.1

Or see this region's nucleotide sequence