Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1895 and GFF1896 are separated by 21 nucleotides GFF1896 and GFF1897 overlap by 4 nucleotides GFF1897 and GFF1898 are separated by 122 nucleotides GFF1898 and GFF1899 overlap by 6 nucleotides
GFF1895 - Aminoglycoside N(6')-acetyltransferase (EC 2.3.1.82) => AAC(6')-Ic,f,g,h,j,k,l,r-z / Uncharacterized hydrolase, at 570,027 to 570,536
GFF1895
GFF1896 - Two-component transcriptional response regulator, LuxR family, at 570,558 to 571,172
GFF1896
GFF1897 - Two-component system sensor histidine kinase/response regulator hybrid, at 571,169 to 573,343
GFF1897
GFF1898 - Phosphoserine phosphatase (EC 3.1.3.3), at 573,466 to 574,119
GFF1898
GFF1899 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 574,114 to 577,656
GFF1899
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -2
-1
0
1
2 at 570.298 kb on + strand, within GFF1895 at 570.298 kb on + strand, within GFF1895 at 570.559 kb on + strand at 570.645 kb on + strand, within GFF1896 at 571.084 kb on + strand, within GFF1896 at 571.659 kb on - strand, within GFF1897 at 571.912 kb on + strand, within GFF1897 at 571.975 kb on - strand, within GFF1897 at 572.065 kb on - strand, within GFF1897 at 572.178 kb on + strand, within GFF1897 at 572.179 kb on - strand, within GFF1897 at 572.179 kb on - strand, within GFF1897 at 572.353 kb on - strand, within GFF1897 at 572.533 kb on - strand, within GFF1897 at 572.599 kb on - strand, within GFF1897 at 572.658 kb on + strand, within GFF1897 at 572.659 kb on - strand, within GFF1897 at 572.860 kb on - strand, within GFF1897 at 572.899 kb on - strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 573.030 kb on + strand, within GFF1897 at 573.031 kb on - strand, within GFF1897 at 573.120 kb on + strand, within GFF1897 at 573.120 kb on + strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.126 kb on + strand at 573.126 kb on + strand at 573.126 kb on + strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.823 kb on + strand, within GFF1898 at 573.823 kb on + strand, within GFF1898 at 573.823 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.992 kb on - strand, within GFF1898 at 573.992 kb on - strand, within GFF1898 at 573.998 kb on - strand, within GFF1898 at 574.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 570,298 + GFF1895 0.53 +0.7 570,298 + GFF1895 0.53 +0.7 570,559 + +1.4 570,645 + GFF1896 0.14 -0.7 571,084 + GFF1896 0.86 +0.7 571,659 - GFF1897 0.23 +0.0 571,912 + GFF1897 0.34 -0.8 571,975 - GFF1897 0.37 -0.6 572,065 - GFF1897 0.41 -0.7 572,178 + GFF1897 0.46 -0.8 572,179 - GFF1897 0.46 -0.4 572,179 - GFF1897 0.46 -0.5 572,353 - GFF1897 0.54 +1.2 572,533 - GFF1897 0.63 -0.1 572,599 - GFF1897 0.66 -0.2 572,658 + GFF1897 0.68 -0.0 572,659 - GFF1897 0.69 -0.2 572,860 - GFF1897 0.78 +0.0 572,899 - GFF1897 0.80 +2.3 572,988 + GFF1897 0.84 -0.7 572,988 + GFF1897 0.84 +0.4 572,988 + GFF1897 0.84 +0.5 573,030 + GFF1897 0.86 +0.5 573,031 - GFF1897 0.86 +1.1 573,120 + GFF1897 0.90 +0.4 573,120 + GFF1897 0.90 -0.7 573,121 - GFF1897 0.90 +0.3 573,121 - GFF1897 0.90 +0.2 573,121 - GFF1897 0.90 +1.1 573,126 + -0.3 573,126 + -0.5 573,126 + -0.5 573,127 - -0.3 573,127 - +0.5 573,127 - +0.2 573,127 - +0.1 573,127 - -0.1 573,127 - +0.1 573,823 + GFF1898 0.55 +0.2 573,823 + GFF1898 0.55 +0.3 573,823 + GFF1898 0.55 -0.4 573,991 + GFF1898 0.80 -0.3 573,991 + GFF1898 0.80 +0.2 573,991 + GFF1898 0.80 -0.3 573,991 + GFF1898 0.80 -0.6 573,992 - GFF1898 0.80 -0.6 573,992 - GFF1898 0.80 +0.2 573,998 - GFF1898 0.81 -0.7 574,223 + -1.8
Or see this region's nucleotide sequence