Strain Fitness in Variovorax sp. SCN45 around GFF1824

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1822 and GFF1823 are separated by 15 nucleotidesGFF1823 and GFF1824 are separated by 37 nucleotidesGFF1824 and GFF1825 are separated by 84 nucleotides GFF1822 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 486,250 to 487,692 GFF1822 GFF1823 - Mg(2+)-transport-ATPase-associated protein MgtC, at 487,708 to 488,424 GFF1823 GFF1824 - hypothetical protein, at 488,462 to 489,037 GFF1824 GFF1825 - Mg(2+) transport ATPase, P-type (EC 3.6.3.2), at 489,122 to 491,887 GFF1825 Position (kb) 488 489 490Strain fitness (log2 ratio) -2 -1 0 1at 487.618 kb on + strandat 487.618 kb on + strandat 487.654 kb on + strandat 487.812 kb on - strand, within GFF1823at 487.878 kb on - strand, within GFF1823at 487.958 kb on + strand, within GFF1823at 487.958 kb on + strand, within GFF1823at 487.958 kb on + strand, within GFF1823at 487.959 kb on - strand, within GFF1823at 487.959 kb on - strand, within GFF1823at 487.959 kb on - strand, within GFF1823at 487.959 kb on - strand, within GFF1823at 487.959 kb on - strand, within GFF1823at 488.028 kb on + strand, within GFF1823at 488.029 kb on - strand, within GFF1823at 488.029 kb on - strand, within GFF1823at 488.029 kb on - strand, within GFF1823at 488.029 kb on - strand, within GFF1823at 488.029 kb on - strand, within GFF1823at 488.130 kb on + strand, within GFF1823at 488.131 kb on - strand, within GFF1823at 488.204 kb on + strand, within GFF1823at 488.204 kb on + strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.205 kb on - strand, within GFF1823at 488.447 kb on + strandat 488.447 kb on + strandat 488.448 kb on - strandat 488.565 kb on + strand, within GFF1824at 488.566 kb on - strand, within GFF1824at 488.637 kb on + strand, within GFF1824at 488.637 kb on + strand, within GFF1824at 488.637 kb on + strand, within GFF1824at 488.638 kb on - strand, within GFF1824at 488.638 kb on - strand, within GFF1824at 488.838 kb on + strand, within GFF1824at 488.838 kb on + strand, within GFF1824at 488.838 kb on + strand, within GFF1824at 488.838 kb on + strand, within GFF1824at 488.838 kb on + strand, within GFF1824at 488.839 kb on - strand, within GFF1824at 488.839 kb on - strand, within GFF1824at 488.839 kb on - strand, within GFF1824at 488.918 kb on + strand, within GFF1824at 488.918 kb on + strand, within GFF1824at 488.919 kb on - strand, within GFF1824at 489.039 kb on + strandat 489.039 kb on + strandat 489.039 kb on + strandat 489.039 kb on + strandat 489.039 kb on + strandat 489.039 kb on + strandat 489.039 kb on + strandat 489.039 kb on + strandat 489.040 kb on - strandat 489.040 kb on - strandat 489.040 kb on - strandat 489.040 kb on - strandat 489.069 kb on + strandat 489.070 kb on - strandat 489.070 kb on - strandat 489.116 kb on + strandat 489.117 kb on - strandat 489.117 kb on - strandat 489.117 kb on - strandat 489.180 kb on + strandat 489.214 kb on - strandat 489.214 kb on - strandat 489.214 kb on - strandat 489.214 kb on - strandat 489.214 kb on - strandat 489.214 kb on - strandat 489.243 kb on + strandat 489.243 kb on + strandat 489.609 kb on + strand, within GFF1825at 489.727 kb on - strand, within GFF1825at 489.727 kb on - strand, within GFF1825at 489.727 kb on - strand, within GFF1825at 489.727 kb on - strand, within GFF1825at 489.827 kb on + strand, within GFF1825at 489.828 kb on - strand, within GFF1825at 489.828 kb on - strand, within GFF1825at 489.828 kb on - strand, within GFF1825

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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487,618 + -0.2
487,618 + +0.0
487,654 + -0.6
487,812 - GFF1823 0.15 -0.6
487,878 - GFF1823 0.24 +0.3
487,958 + GFF1823 0.35 +0.3
487,958 + GFF1823 0.35 -0.4
487,958 + GFF1823 0.35 -0.9
487,959 - GFF1823 0.35 -0.5
487,959 - GFF1823 0.35 +0.1
487,959 - GFF1823 0.35 -0.0
487,959 - GFF1823 0.35 +0.1
487,959 - GFF1823 0.35 -0.5
488,028 + GFF1823 0.45 -0.7
488,029 - GFF1823 0.45 -0.2
488,029 - GFF1823 0.45 +0.7
488,029 - GFF1823 0.45 -0.1
488,029 - GFF1823 0.45 +0.7
488,029 - GFF1823 0.45 +1.4
488,130 + GFF1823 0.59 -1.0
488,131 - GFF1823 0.59 +0.7
488,204 + GFF1823 0.69 -0.3
488,204 + GFF1823 0.69 -0.6
488,205 - GFF1823 0.69 +0.3
488,205 - GFF1823 0.69 -0.2
488,205 - GFF1823 0.69 +0.4
488,205 - GFF1823 0.69 -0.7
488,205 - GFF1823 0.69 +0.8
488,205 - GFF1823 0.69 -1.1
488,447 + -1.4
488,447 + -0.3
488,448 - -0.1
488,565 + GFF1824 0.18 -0.7
488,566 - GFF1824 0.18 -0.2
488,637 + GFF1824 0.30 -1.9
488,637 + GFF1824 0.30 -0.6
488,637 + GFF1824 0.30 +0.7
488,638 - GFF1824 0.31 -0.5
488,638 - GFF1824 0.31 +0.8
488,838 + GFF1824 0.65 -0.0
488,838 + GFF1824 0.65 -0.3
488,838 + GFF1824 0.65 +0.5
488,838 + GFF1824 0.65 +0.4
488,838 + GFF1824 0.65 -0.8
488,839 - GFF1824 0.65 -1.8
488,839 - GFF1824 0.65 -0.3
488,839 - GFF1824 0.65 -0.3
488,918 + GFF1824 0.79 +0.1
488,918 + GFF1824 0.79 -0.6
488,919 - GFF1824 0.79 -0.5
489,039 + -0.5
489,039 + -1.3
489,039 + -0.9
489,039 + +0.1
489,039 + -0.1
489,039 + +0.1
489,039 + -0.2
489,039 + -0.0
489,040 - +0.2
489,040 - +0.2
489,040 - -0.6
489,040 - -0.4
489,069 + -0.6
489,070 - +0.6
489,070 - -0.2
489,116 + -0.5
489,117 - +0.1
489,117 - +0.8
489,117 - +0.4
489,180 + -0.0
489,214 - -0.4
489,214 - +0.3
489,214 - -0.1
489,214 - -0.1
489,214 - +0.0
489,214 - +0.1
489,243 + +0.7
489,243 + -0.7
489,609 + GFF1825 0.18 -1.1
489,727 - GFF1825 0.22 -0.1
489,727 - GFF1825 0.22 +0.2
489,727 - GFF1825 0.22 -1.1
489,727 - GFF1825 0.22 -0.8
489,827 + GFF1825 0.25 +0.8
489,828 - GFF1825 0.26 -0.6
489,828 - GFF1825 0.26 -0.4
489,828 - GFF1825 0.26 -1.1

Or see this region's nucleotide sequence