Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1765 and GFF1766 overlap by 14 nucleotides GFF1766 and GFF1767 are separated by 7 nucleotides GFF1767 and GFF1768 are separated by 14 nucleotides
GFF1765 - putative membrane protein, at 427,056 to 428,234
GFF1765
GFF1766 - no description, at 428,221 to 429,402
GFF1766
GFF1767 - no description, at 429,410 to 429,694
GFF1767
GFF1768 - FIG00729359: hypothetical protein, at 429,709 to 431,220
GFF1768
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.888 kb on + strand, within GFF1765 at 427.888 kb on + strand, within GFF1765 at 428.128 kb on + strand at 428.129 kb on - strand at 428.630 kb on + strand, within GFF1766 at 428.631 kb on - strand, within GFF1766 at 428.639 kb on + strand, within GFF1766 at 428.639 kb on + strand, within GFF1766 at 428.640 kb on - strand, within GFF1766 at 428.654 kb on + strand, within GFF1766 at 428.655 kb on - strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.880 kb on - strand, within GFF1766 at 428.934 kb on - strand, within GFF1766 at 429.146 kb on + strand, within GFF1766 at 429.147 kb on - strand, within GFF1766 at 429.182 kb on + strand, within GFF1766 at 429.183 kb on - strand, within GFF1766 at 429.411 kb on + strand at 429.411 kb on + strand at 429.411 kb on + strand at 429.411 kb on + strand at 429.411 kb on + strand at 429.412 kb on - strand at 429.519 kb on + strand, within GFF1767 at 429.519 kb on + strand, within GFF1767 at 429.519 kb on + strand, within GFF1767 at 429.519 kb on + strand, within GFF1767 at 429.520 kb on - strand, within GFF1767 at 429.520 kb on - strand, within GFF1767 at 429.520 kb on - strand, within GFF1767 at 429.537 kb on + strand, within GFF1767 at 429.537 kb on + strand, within GFF1767 at 429.538 kb on - strand, within GFF1767 at 429.538 kb on - strand, within GFF1767 at 429.538 kb on - strand, within GFF1767 at 429.598 kb on + strand, within GFF1767 at 429.600 kb on + strand, within GFF1767 at 429.600 kb on + strand, within GFF1767 at 429.600 kb on + strand, within GFF1767 at 429.601 kb on - strand, within GFF1767 at 429.758 kb on + strand at 430.034 kb on - strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.187 kb on + strand, within GFF1768 at 430.188 kb on - strand, within GFF1768 at 430.188 kb on - strand, within GFF1768 at 430.188 kb on - strand, within GFF1768 at 430.188 kb on - strand, within GFF1768 at 430.188 kb on - strand, within GFF1768 at 430.188 kb on - strand, within GFF1768
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 427,888 + GFF1765 0.71 -0.6 427,888 + GFF1765 0.71 -0.6 428,128 + -1.0 428,129 - -0.1 428,630 + GFF1766 0.35 +0.2 428,631 - GFF1766 0.35 -0.3 428,639 + GFF1766 0.35 +0.1 428,639 + GFF1766 0.35 +1.1 428,640 - GFF1766 0.35 +0.3 428,654 + GFF1766 0.37 -0.0 428,655 - GFF1766 0.37 -0.3 428,879 + GFF1766 0.56 +1.3 428,879 + GFF1766 0.56 +0.4 428,879 + GFF1766 0.56 +0.0 428,879 + GFF1766 0.56 +0.2 428,879 + GFF1766 0.56 -0.2 428,879 + GFF1766 0.56 +0.5 428,880 - GFF1766 0.56 +0.8 428,934 - GFF1766 0.60 -1.9 429,146 + GFF1766 0.78 -0.1 429,147 - GFF1766 0.78 -0.3 429,182 + GFF1766 0.81 +0.3 429,183 - GFF1766 0.81 -0.6 429,411 + -1.3 429,411 + -1.5 429,411 + +0.0 429,411 + +0.1 429,411 + +0.0 429,412 - -0.6 429,519 + GFF1767 0.38 +0.6 429,519 + GFF1767 0.38 -1.2 429,519 + GFF1767 0.38 -0.9 429,519 + GFF1767 0.38 +0.9 429,520 - GFF1767 0.39 +1.8 429,520 - GFF1767 0.39 -0.3 429,520 - GFF1767 0.39 -0.4 429,537 + GFF1767 0.45 -0.3 429,537 + GFF1767 0.45 +0.2 429,538 - GFF1767 0.45 +0.4 429,538 - GFF1767 0.45 -0.1 429,538 - GFF1767 0.45 -0.9 429,598 + GFF1767 0.66 +1.8 429,600 + GFF1767 0.67 -0.7 429,600 + GFF1767 0.67 +0.0 429,600 + GFF1767 0.67 +0.4 429,601 - GFF1767 0.67 -0.2 429,758 + -0.1 430,034 - GFF1768 0.21 -0.2 430,187 + GFF1768 0.32 -0.0 430,187 + GFF1768 0.32 +0.6 430,187 + GFF1768 0.32 +0.1 430,187 + GFF1768 0.32 +0.3 430,187 + GFF1768 0.32 +0.2 430,187 + GFF1768 0.32 -0.4 430,187 + GFF1768 0.32 -0.9 430,187 + GFF1768 0.32 +0.4 430,187 + GFF1768 0.32 -1.2 430,187 + GFF1768 0.32 -0.8 430,187 + GFF1768 0.32 +1.0 430,187 + GFF1768 0.32 -0.4 430,187 + GFF1768 0.32 -0.5 430,187 + GFF1768 0.32 -0.8 430,187 + GFF1768 0.32 +0.6 430,187 + GFF1768 0.32 -0.2 430,187 + GFF1768 0.32 -0.6 430,188 - GFF1768 0.32 -0.1 430,188 - GFF1768 0.32 -0.5 430,188 - GFF1768 0.32 +0.9 430,188 - GFF1768 0.32 -0.2 430,188 - GFF1768 0.32 -1.1 430,188 - GFF1768 0.32 +0.6
Or see this region's nucleotide sequence