Strain Fitness in Variovorax sp. SCN45 around GFF1746

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1745 and GFF1746 are separated by 39 nucleotidesGFF1746 and GFF1747 are separated by 100 nucleotides GFF1745 - Acyl-CoA dehydrogenase, at 405,288 to 406,523 GFF1745 GFF1746 - BUG/TctC family periplasmic protein, at 406,563 to 407,561 GFF1746 GFF1747 - FIG00799528: hypothetical protein, at 407,662 to 408,759 GFF1747 Position (kb) 406 407 408Strain fitness (log2 ratio) -2 -1 0 1at 405.870 kb on + strand, within GFF1745at 405.871 kb on - strand, within GFF1745at 405.871 kb on - strand, within GFF1745at 405.871 kb on - strand, within GFF1745at 405.972 kb on + strand, within GFF1745at 406.164 kb on + strand, within GFF1745at 406.165 kb on - strand, within GFF1745at 406.165 kb on - strand, within GFF1745at 406.441 kb on + strandat 406.441 kb on + strandat 406.441 kb on + strandat 406.441 kb on + strandat 406.441 kb on + strandat 406.442 kb on - strandat 406.442 kb on - strandat 406.442 kb on - strandat 406.442 kb on - strandat 406.449 kb on + strandat 406.449 kb on + strandat 406.450 kb on - strandat 406.450 kb on - strandat 406.450 kb on - strandat 406.450 kb on - strandat 406.450 kb on - strandat 406.521 kb on + strandat 406.521 kb on + strandat 406.522 kb on - strandat 406.522 kb on - strandat 406.544 kb on + strandat 406.851 kb on + strand, within GFF1746at 406.852 kb on - strand, within GFF1746at 406.863 kb on + strand, within GFF1746at 406.863 kb on + strand, within GFF1746at 406.899 kb on + strand, within GFF1746at 406.899 kb on + strand, within GFF1746at 406.900 kb on - strand, within GFF1746at 406.900 kb on - strand, within GFF1746at 406.900 kb on - strand, within GFF1746at 406.900 kb on - strand, within GFF1746at 406.900 kb on - strand, within GFF1746at 406.915 kb on - strand, within GFF1746at 407.139 kb on + strand, within GFF1746at 407.139 kb on + strand, within GFF1746at 407.140 kb on - strand, within GFF1746at 407.140 kb on - strand, within GFF1746at 407.217 kb on + strand, within GFF1746at 407.394 kb on + strand, within GFF1746at 407.394 kb on + strand, within GFF1746at 407.394 kb on + strand, within GFF1746at 407.487 kb on + strandat 407.487 kb on + strandat 407.559 kb on + strandat 407.559 kb on + strandat 407.560 kb on - strandat 407.582 kb on - strandat 407.740 kb on + strandat 407.740 kb on + strandat 407.740 kb on + strandat 407.740 kb on + strandat 407.740 kb on + strandat 407.741 kb on - strandat 407.741 kb on - strandat 407.741 kb on - strandat 408.095 kb on - strand, within GFF1747at 408.095 kb on - strand, within GFF1747at 408.095 kb on - strand, within GFF1747at 408.158 kb on - strand, within GFF1747at 408.197 kb on - strand, within GFF1747at 408.270 kb on + strand, within GFF1747at 408.271 kb on - strand, within GFF1747at 408.409 kb on + strand, within GFF1747at 408.409 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.482 kb on - strand, within GFF1747at 408.482 kb on - strand, within GFF1747at 408.526 kb on + strand, within GFF1747at 408.526 kb on + strand, within GFF1747at 408.526 kb on + strand, within GFF1747at 408.527 kb on - strand, within GFF1747at 408.527 kb on - strand, within GFF1747

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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405,870 + GFF1745 0.47 -0.3
405,871 - GFF1745 0.47 -0.5
405,871 - GFF1745 0.47 -0.3
405,871 - GFF1745 0.47 -0.8
405,972 + GFF1745 0.55 -0.8
406,164 + GFF1745 0.71 -0.3
406,165 - GFF1745 0.71 -0.1
406,165 - GFF1745 0.71 -0.5
406,441 + +0.1
406,441 + -0.7
406,441 + +0.6
406,441 + -0.7
406,441 + -0.5
406,442 - +0.4
406,442 - -1.2
406,442 - -0.3
406,442 - -1.5
406,449 + -0.1
406,449 + +0.7
406,450 - +0.0
406,450 - -0.2
406,450 - -0.9
406,450 - +0.4
406,450 - +1.0
406,521 + -0.9
406,521 + -0.6
406,522 - -0.9
406,522 - -0.5
406,544 + -1.8
406,851 + GFF1746 0.29 +0.4
406,852 - GFF1746 0.29 -0.5
406,863 + GFF1746 0.30 +0.1
406,863 + GFF1746 0.30 +0.4
406,899 + GFF1746 0.34 +0.4
406,899 + GFF1746 0.34 -0.2
406,900 - GFF1746 0.34 -0.3
406,900 - GFF1746 0.34 +0.6
406,900 - GFF1746 0.34 -0.6
406,900 - GFF1746 0.34 -1.3
406,900 - GFF1746 0.34 -0.7
406,915 - GFF1746 0.35 +1.0
407,139 + GFF1746 0.58 -0.5
407,139 + GFF1746 0.58 -0.5
407,140 - GFF1746 0.58 -0.0
407,140 - GFF1746 0.58 -0.2
407,217 + GFF1746 0.65 -0.2
407,394 + GFF1746 0.83 +1.1
407,394 + GFF1746 0.83 +0.9
407,394 + GFF1746 0.83 -0.4
407,487 + -0.3
407,487 + -0.3
407,559 + -0.0
407,559 + -0.4
407,560 - +0.1
407,582 - -0.9
407,740 + -0.1
407,740 + -0.5
407,740 + -0.9
407,740 + +0.3
407,740 + +0.8
407,741 - -0.7
407,741 - +0.3
407,741 - -1.4
408,095 - GFF1747 0.39 -0.2
408,095 - GFF1747 0.39 -0.2
408,095 - GFF1747 0.39 -0.4
408,158 - GFF1747 0.45 -0.9
408,197 - GFF1747 0.49 -0.0
408,270 + GFF1747 0.55 -0.0
408,271 - GFF1747 0.55 -0.4
408,409 + GFF1747 0.68 +0.2
408,409 + GFF1747 0.68 +0.7
408,481 + GFF1747 0.75 -1.8
408,481 + GFF1747 0.75 +0.0
408,481 + GFF1747 0.75 -1.2
408,481 + GFF1747 0.75 -0.4
408,482 - GFF1747 0.75 -0.7
408,482 - GFF1747 0.75 +0.6
408,526 + GFF1747 0.79 -0.7
408,526 + GFF1747 0.79 -0.8
408,526 + GFF1747 0.79 +0.5
408,527 - GFF1747 0.79 +0.5
408,527 - GFF1747 0.79 +0.6

Or see this region's nucleotide sequence