Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1731 and GFF1732 are separated by 525 nucleotides GFF1732 and GFF1733 are separated by 186 nucleotides GFF1733 and GFF1734 are separated by 39 nucleotides GFF1734 and GFF1735 are separated by 1 nucleotides GFF1735 and GFF1736 are separated by 85 nucleotides
GFF1731 - Short-chain dehydrogenase/reductase SDR?, at 391,857 to 392,612
GFF1731
GFF1732 - DNA-binding protein HU-beta, at 393,138 to 393,425
GFF1732
GFF1733 - Cell wall-associated hydrolases (invasion-associated proteins), at 393,612 to 394,115
GFF1733
GFF1734 - no description, at 394,155 to 394,514
GFF1734
GFF1735 - no description, at 394,516 to 394,635
GFF1735
GFF1736 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 394,721 to 396,010
GFF1736
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 392.899 kb on + strand at 392.899 kb on + strand at 392.936 kb on + strand at 392.936 kb on + strand at 392.936 kb on + strand at 392.936 kb on + strand at 392.937 kb on - strand at 392.937 kb on - strand at 392.981 kb on + strand at 392.981 kb on + strand at 392.981 kb on + strand at 392.982 kb on - strand at 393.063 kb on + strand at 393.064 kb on - strand at 393.423 kb on + strand at 393.423 kb on + strand at 393.423 kb on + strand at 393.423 kb on + strand at 393.424 kb on - strand at 393.424 kb on - strand at 393.424 kb on - strand at 393.540 kb on - strand at 393.540 kb on - strand at 393.540 kb on - strand at 393.801 kb on + strand, within GFF1733 at 393.858 kb on + strand, within GFF1733 at 393.858 kb on + strand, within GFF1733 at 393.859 kb on - strand, within GFF1733 at 393.864 kb on + strand, within GFF1733 at 393.865 kb on - strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.078 kb on - strand at 394.078 kb on - strand at 394.435 kb on + strand, within GFF1734 at 394.435 kb on + strand, within GFF1734 at 394.435 kb on + strand, within GFF1734 at 394.489 kb on + strand at 394.666 kb on - strand at 394.724 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 392,899 + -1.4 392,899 + -0.5 392,936 + +0.0 392,936 + -1.1 392,936 + -0.9 392,936 + +0.2 392,937 - +0.1 392,937 - -0.4 392,981 + -0.3 392,981 + +0.3 392,981 + -0.6 392,982 - +1.0 393,063 + -0.2 393,064 - -0.8 393,423 + -0.1 393,423 + +0.8 393,423 + -1.3 393,423 + +0.8 393,424 - +2.3 393,424 - -0.3 393,424 - +2.0 393,540 - -0.2 393,540 - -0.4 393,540 - -0.7 393,801 + GFF1733 0.38 -0.2 393,858 + GFF1733 0.49 -0.6 393,858 + GFF1733 0.49 -0.9 393,859 - GFF1733 0.49 -1.6 393,864 + GFF1733 0.50 -0.6 393,865 - GFF1733 0.50 -0.9 394,002 + GFF1733 0.77 -1.0 394,002 + GFF1733 0.77 -0.1 394,002 + GFF1733 0.77 +0.4 394,002 + GFF1733 0.77 -0.3 394,002 + GFF1733 0.77 -0.1 394,002 + GFF1733 0.77 +0.1 394,002 + GFF1733 0.77 -0.1 394,002 + GFF1733 0.77 +0.2 394,002 + GFF1733 0.77 -0.6 394,003 - GFF1733 0.78 +0.3 394,003 - GFF1733 0.78 -0.6 394,003 - GFF1733 0.78 -0.4 394,003 - GFF1733 0.78 +0.1 394,003 - GFF1733 0.78 -1.1 394,003 - GFF1733 0.78 -2.0 394,078 - -2.3 394,078 - -0.5 394,435 + GFF1734 0.78 -1.1 394,435 + GFF1734 0.78 +1.0 394,435 + GFF1734 0.78 -0.2 394,489 + +0.4 394,666 - +0.1 394,724 + -1.3
Or see this region's nucleotide sequence