Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF170 and GFF171 are separated by 73 nucleotides GFF171 and GFF172 are separated by 74 nucleotides GFF172 and GFF173 are separated by 350 nucleotides
GFF170 - Two-component system sensor histidine kinase/response regulator hybrid, at 200,649 to 201,872
GFF170
GFF171 - Histidine kinase, at 201,946 to 202,305
GFF171
GFF172 - hypothetical protein, at 202,380 to 204,242
GFF172
GFF173 - Hexuronate utilization operon transcriptional repressor ExuR, at 204,593 to 205,327
GFF173
Position (kb) 202
203
204
205 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.773 kb on + strand at 201.773 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.882 kb on + strand at 201.882 kb on + strand at 201.883 kb on - strand at 201.927 kb on - strand at 201.927 kb on - strand at 202.032 kb on + strand, within GFF171 at 202.032 kb on + strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.037 kb on - strand, within GFF171 at 202.037 kb on - strand, within GFF171 at 202.037 kb on - strand, within GFF171 at 202.037 kb on - strand, within GFF171 at 202.037 kb on - strand, within GFF171 at 202.384 kb on + strand at 202.384 kb on + strand at 202.385 kb on - strand at 202.420 kb on + strand at 202.420 kb on + strand at 202.420 kb on + strand at 202.420 kb on + strand at 202.420 kb on + strand at 202.421 kb on - strand at 202.421 kb on - strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.501 kb on + strand at 202.501 kb on + strand at 202.501 kb on + strand at 202.501 kb on + strand at 202.502 kb on - strand at 202.502 kb on - strand at 202.502 kb on - strand at 202.502 kb on - strand at 202.966 kb on + strand, within GFF172 at 202.966 kb on + strand, within GFF172 at 202.966 kb on + strand, within GFF172 at 202.966 kb on + strand, within GFF172 at 202.966 kb on + strand, within GFF172 at 202.967 kb on - strand, within GFF172 at 202.967 kb on - strand, within GFF172 at 202.967 kb on - strand, within GFF172 at 202.967 kb on - strand, within GFF172 at 202.967 kb on - strand, within GFF172 at 203.017 kb on + strand, within GFF172 at 203.017 kb on + strand, within GFF172 at 203.017 kb on + strand, within GFF172 at 203.017 kb on + strand, within GFF172 at 203.018 kb on - strand, within GFF172 at 203.018 kb on - strand, within GFF172 at 203.018 kb on - strand, within GFF172 at 203.018 kb on - strand, within GFF172 at 203.018 kb on - strand, within GFF172 at 203.257 kb on + strand, within GFF172 at 203.257 kb on + strand, within GFF172 at 203.257 kb on + strand, within GFF172 at 203.257 kb on + strand, within GFF172 at 203.257 kb on + strand, within GFF172 at 203.257 kb on + strand, within GFF172 at 203.257 kb on + strand, within GFF172 at 203.257 kb on + strand, within GFF172 at 203.257 kb on + strand, within GFF172 at 203.257 kb on + strand, within GFF172 at 203.258 kb on - strand, within GFF172 at 203.258 kb on - strand, within GFF172 at 203.258 kb on - strand, within GFF172 at 203.258 kb on - strand, within GFF172 at 203.258 kb on - strand, within GFF172 at 203.527 kb on + strand, within GFF172 at 203.527 kb on + strand, within GFF172 at 203.527 kb on + strand, within GFF172 at 203.527 kb on + strand, within GFF172 at 203.527 kb on + strand, within GFF172 at 203.527 kb on + strand, within GFF172 at 203.527 kb on + strand, within GFF172 at 203.528 kb on - strand, within GFF172 at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.064 kb on + strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.065 kb on - strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.264 kb on + strand at 204.265 kb on - strand at 204.265 kb on - strand at 204.265 kb on - strand at 204.265 kb on - strand at 204.439 kb on + strand at 204.439 kb on + strand at 204.462 kb on + strand at 204.462 kb on + strand at 204.463 kb on - strand at 204.463 kb on - strand at 204.501 kb on + strand at 204.502 kb on - strand at 204.502 kb on - strand at 204.530 kb on + strand at 204.537 kb on - strand at 204.542 kb on + strand at 204.556 kb on + strand at 204.556 kb on + strand at 204.557 kb on - strand at 204.557 kb on - strand at 204.653 kb on + strand at 204.653 kb on + strand at 204.653 kb on + strand at 204.654 kb on - strand at 204.654 kb on - strand at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.836 kb on + strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.837 kb on - strand, within GFF173 at 204.884 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.001 kb on + strand, within GFF173 at 205.002 kb on - strand, within GFF173 at 205.002 kb on - strand, within GFF173 at 205.002 kb on - strand, within GFF173 at 205.002 kb on - strand, within GFF173
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 201,735 + GFF170 0.89 -0.4 201,735 + GFF170 0.89 -0.5 201,735 + GFF170 0.89 +0.5 201,735 + GFF170 0.89 +0.2 201,735 + GFF170 0.89 -0.7 201,735 + GFF170 0.89 +0.0 201,735 + GFF170 0.89 -0.3 201,735 + GFF170 0.89 +1.3 201,735 + GFF170 0.89 +1.3 201,735 + GFF170 0.89 +0.0 201,735 + GFF170 0.89 +0.9 201,735 + GFF170 0.89 -0.3 201,735 + GFF170 0.89 -0.7 201,735 + GFF170 0.89 -1.9 201,736 - GFF170 0.89 -0.5 201,736 - GFF170 0.89 -0.7 201,736 - GFF170 0.89 -0.6 201,736 - GFF170 0.89 +1.4 201,736 - GFF170 0.89 -0.3 201,736 - GFF170 0.89 +0.7 201,736 - GFF170 0.89 -1.0 201,736 - GFF170 0.89 -0.6 201,736 - GFF170 0.89 +0.1 201,736 - GFF170 0.89 -1.0 201,773 + +0.8 201,773 + -0.4 201,870 + -0.4 201,870 + +0.9 201,870 + -0.4 201,870 + +0.4 201,870 + +0.3 201,870 + -0.9 201,870 + -0.3 201,870 + -0.4 201,870 + -0.6 201,870 + -0.6 201,870 + -0.7 201,870 + -1.1 201,870 + +0.2 201,870 + -0.9 201,871 - +0.8 201,871 - -1.1 201,871 - -0.3 201,871 - -1.9 201,871 - +0.3 201,871 - -0.5 201,871 - -0.3 201,871 - -0.2 201,871 - -0.9 201,871 - -0.1 201,882 + -0.7 201,882 + +1.3 201,883 - +0.3 201,927 - -1.9 201,927 - +0.5 202,032 + GFF171 0.24 -0.0 202,032 + GFF171 0.24 +0.1 202,033 - GFF171 0.24 +0.3 202,033 - GFF171 0.24 -0.2 202,033 - GFF171 0.24 +0.3 202,033 - GFF171 0.24 +0.9 202,033 - GFF171 0.24 -0.6 202,033 - GFF171 0.24 -0.3 202,036 + GFF171 0.25 -0.2 202,036 + GFF171 0.25 +0.3 202,036 + GFF171 0.25 -1.7 202,036 + GFF171 0.25 -0.5 202,036 + GFF171 0.25 -0.1 202,036 + GFF171 0.25 -0.8 202,036 + GFF171 0.25 +0.2 202,036 + GFF171 0.25 -1.9 202,036 + GFF171 0.25 -0.1 202,036 + GFF171 0.25 -0.1 202,037 - GFF171 0.25 -0.9 202,037 - GFF171 0.25 -0.6 202,037 - GFF171 0.25 -0.1 202,037 - GFF171 0.25 -1.1 202,037 - GFF171 0.25 +0.6 202,384 + -0.8 202,384 + -0.1 202,385 - -1.4 202,420 + -0.3 202,420 + -0.2 202,420 + +0.0 202,420 + -1.2 202,420 + +0.3 202,421 - -0.6 202,421 - +0.0 202,450 + -0.3 202,450 + -1.0 202,450 + -0.6 202,450 + -0.0 202,450 + -0.7 202,450 + +0.3 202,450 + -0.5 202,450 + +0.6 202,450 + -0.5 202,450 + -0.1 202,450 + +0.2 202,450 + +0.4 202,450 + -0.0 202,450 + -0.1 202,450 + +0.5 202,450 + +0.1 202,450 + -0.1 202,451 - +0.2 202,451 - -3.1 202,451 - -0.4 202,451 - +1.1 202,451 - -0.5 202,451 - +1.1 202,451 - -1.1 202,451 - -0.2 202,451 - -0.5 202,451 - -0.8 202,451 - +0.9 202,451 - +0.4 202,451 - -0.5 202,451 - -0.4 202,451 - -0.1 202,501 + +0.1 202,501 + -0.7 202,501 + +0.2 202,501 + -0.7 202,502 - +0.3 202,502 - -0.2 202,502 - -0.8 202,502 - +1.3 202,966 + GFF172 0.31 -0.5 202,966 + GFF172 0.31 -0.7 202,966 + GFF172 0.31 -0.5 202,966 + GFF172 0.31 -0.3 202,966 + GFF172 0.31 -0.3 202,967 - GFF172 0.32 -1.4 202,967 - GFF172 0.32 -0.7 202,967 - GFF172 0.32 -0.5 202,967 - GFF172 0.32 +0.3 202,967 - GFF172 0.32 -0.9 203,017 + GFF172 0.34 +0.3 203,017 + GFF172 0.34 +1.9 203,017 + GFF172 0.34 -0.2 203,017 + GFF172 0.34 -1.3 203,018 - GFF172 0.34 -0.6 203,018 - GFF172 0.34 -0.9 203,018 - GFF172 0.34 -0.9 203,018 - GFF172 0.34 +1.0 203,018 - GFF172 0.34 -0.8 203,257 + GFF172 0.47 +0.1 203,257 + GFF172 0.47 -1.0 203,257 + GFF172 0.47 +0.5 203,257 + GFF172 0.47 +1.3 203,257 + GFF172 0.47 -0.1 203,257 + GFF172 0.47 +0.4 203,257 + GFF172 0.47 -0.2 203,257 + GFF172 0.47 +0.3 203,257 + GFF172 0.47 -0.4 203,257 + GFF172 0.47 -0.3 203,258 - GFF172 0.47 -0.4 203,258 - GFF172 0.47 -0.3 203,258 - GFF172 0.47 +0.3 203,258 - GFF172 0.47 +0.7 203,258 - GFF172 0.47 +0.7 203,527 + GFF172 0.62 +0.3 203,527 + GFF172 0.62 -0.7 203,527 + GFF172 0.62 -2.1 203,527 + GFF172 0.62 +1.3 203,527 + GFF172 0.62 -0.1 203,527 + GFF172 0.62 -0.7 203,527 + GFF172 0.62 -1.3 203,528 - GFF172 0.62 -0.5 204,064 + +0.9 204,064 + -0.7 204,064 + +0.6 204,064 + +0.6 204,064 + -0.2 204,064 + +0.0 204,064 + -0.7 204,064 + -0.2 204,064 + -0.1 204,065 - -0.3 204,065 - +0.4 204,065 - -2.6 204,065 - -0.1 204,065 - -0.1 204,065 - +0.2 204,065 - +0.2 204,264 + +0.3 204,264 + -0.3 204,264 + -0.0 204,264 + -0.6 204,264 + -0.4 204,264 + -0.3 204,264 + -0.6 204,265 - -0.5 204,265 - +0.2 204,265 - +0.3 204,265 - -0.7 204,439 + -0.1 204,439 + -0.0 204,462 + +0.8 204,462 + +0.3 204,463 - +0.4 204,463 - -0.1 204,501 + -0.7 204,502 - -0.1 204,502 - +0.4 204,530 + -0.7 204,537 - -1.5 204,542 + -1.1 204,556 + -0.5 204,556 + -0.6 204,557 - -0.1 204,557 - -0.3 204,653 + -0.2 204,653 + -0.0 204,653 + -0.8 204,654 - -0.2 204,654 - +0.6 204,836 + GFF173 0.33 -1.7 204,836 + GFF173 0.33 +0.6 204,836 + GFF173 0.33 -1.5 204,836 + GFF173 0.33 -0.5 204,836 + GFF173 0.33 -0.6 204,836 + GFF173 0.33 -0.5 204,836 + GFF173 0.33 -1.7 204,836 + GFF173 0.33 -1.9 204,836 + GFF173 0.33 +0.3 204,836 + GFF173 0.33 -0.1 204,836 + GFF173 0.33 -0.1 204,836 + GFF173 0.33 +1.6 204,836 + GFF173 0.33 -0.3 204,836 + GFF173 0.33 -1.1 204,836 + GFF173 0.33 -0.0 204,836 + GFF173 0.33 -0.5 204,836 + GFF173 0.33 +0.7 204,836 + GFF173 0.33 -0.8 204,836 + GFF173 0.33 -0.3 204,837 - GFF173 0.33 +1.0 204,837 - GFF173 0.33 +0.0 204,837 - GFF173 0.33 -0.8 204,837 - GFF173 0.33 -0.3 204,837 - GFF173 0.33 -0.8 204,837 - GFF173 0.33 -0.4 204,837 - GFF173 0.33 +1.0 204,837 - GFF173 0.33 -0.1 204,837 - GFF173 0.33 -1.3 204,837 - GFF173 0.33 +0.4 204,837 - GFF173 0.33 +0.5 204,884 + GFF173 0.40 -0.4 205,001 + GFF173 0.56 -0.5 205,001 + GFF173 0.56 -0.3 205,001 + GFF173 0.56 -0.3 205,001 + GFF173 0.56 -0.6 205,001 + GFF173 0.56 -1.2 205,001 + GFF173 0.56 -0.2 205,001 + GFF173 0.56 +1.2 205,002 - GFF173 0.56 +0.1 205,002 - GFF173 0.56 -1.3 205,002 - GFF173 0.56 -0.1 205,002 - GFF173 0.56 -1.1
Or see this region's nucleotide sequence