Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1606 and GFF1607 are separated by 92 nucleotides GFF1607 and GFF1608 are separated by 53 nucleotides
GFF1606 - Cys-tRNA(Pro) deacylase YbaK, at 203,690 to 205,276
GFF1606
GFF1607 - D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2), at 205,369 to 206,814
GFF1607
GFF1608 - Aminotransferase, class III, at 206,868 to 208,232
GFF1608
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 204.541 kb on - strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.922 kb on - strand, within GFF1606 at 204.922 kb on - strand, within GFF1606 at 204.936 kb on - strand, within GFF1606 at 205.117 kb on - strand, within GFF1606 at 205.335 kb on - strand at 205.335 kb on - strand at 205.358 kb on - strand at 205.840 kb on + strand, within GFF1607 at 206.055 kb on + strand, within GFF1607 at 206.087 kb on - strand, within GFF1607 at 206.123 kb on - strand, within GFF1607 at 206.123 kb on - strand, within GFF1607 at 206.209 kb on + strand, within GFF1607 at 206.210 kb on - strand, within GFF1607 at 206.469 kb on - strand, within GFF1607 at 206.503 kb on + strand, within GFF1607 at 206.503 kb on + strand, within GFF1607 at 206.503 kb on + strand, within GFF1607 at 206.504 kb on - strand, within GFF1607 at 206.573 kb on - strand, within GFF1607 at 207.118 kb on - strand, within GFF1608 at 207.118 kb on - strand, within GFF1608 at 207.264 kb on + strand, within GFF1608 at 207.267 kb on + strand, within GFF1608 at 207.267 kb on + strand, within GFF1608 at 207.268 kb on - strand, within GFF1608 at 207.268 kb on - strand, within GFF1608 at 207.268 kb on - strand, within GFF1608 at 207.550 kb on + strand, within GFF1608 at 207.786 kb on + strand, within GFF1608 at 207.786 kb on + strand, within GFF1608 at 207.787 kb on - strand, within GFF1608 at 207.787 kb on - strand, within GFF1608
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 204,541 - GFF1606 0.54 -0.7 204,921 + GFF1606 0.78 -0.4 204,921 + GFF1606 0.78 +0.1 204,921 + GFF1606 0.78 -0.9 204,921 + GFF1606 0.78 -0.4 204,921 + GFF1606 0.78 +0.3 204,921 + GFF1606 0.78 -1.4 204,921 + GFF1606 0.78 -0.8 204,922 - GFF1606 0.78 +0.4 204,922 - GFF1606 0.78 +0.1 204,936 - GFF1606 0.79 -0.6 205,117 - GFF1606 0.90 -0.3 205,335 - +1.1 205,335 - -0.1 205,358 - -0.9 205,840 + GFF1607 0.33 -2.0 206,055 + GFF1607 0.47 -0.9 206,087 - GFF1607 0.50 -0.3 206,123 - GFF1607 0.52 +3.3 206,123 - GFF1607 0.52 +0.2 206,209 + GFF1607 0.58 -0.3 206,210 - GFF1607 0.58 -0.1 206,469 - GFF1607 0.76 -0.4 206,503 + GFF1607 0.78 -0.5 206,503 + GFF1607 0.78 -0.6 206,503 + GFF1607 0.78 -0.0 206,504 - GFF1607 0.78 -1.2 206,573 - GFF1607 0.83 +0.5 207,118 - GFF1608 0.18 +0.4 207,118 - GFF1608 0.18 +0.5 207,264 + GFF1608 0.29 -0.5 207,267 + GFF1608 0.29 +0.6 207,267 + GFF1608 0.29 -0.6 207,268 - GFF1608 0.29 +0.3 207,268 - GFF1608 0.29 -0.0 207,268 - GFF1608 0.29 +0.3 207,550 + GFF1608 0.50 -0.6 207,786 + GFF1608 0.67 -0.2 207,786 + GFF1608 0.67 +0.9 207,787 - GFF1608 0.67 -0.3 207,787 - GFF1608 0.67 -0.0
Or see this region's nucleotide sequence