Strain Fitness in Variovorax sp. SCN45 around GFF1598

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1597 and GFF1598 are separated by 171 nucleotidesGFF1598 and GFF1599 overlap by 4 nucleotidesGFF1599 and GFF1600 overlap by 4 nucleotides GFF1597 - Acetolactate synthase large subunit (EC 2.2.1.6), at 194,770 to 196,578 GFF1597 GFF1598 - no description, at 196,750 to 197,148 GFF1598 GFF1599 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 197,145 to 198,116 GFF1599 GFF1600 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 198,113 to 199,000 GFF1600 Position (kb) 196 197 198Strain fitness (log2 ratio) -2 -1 0 1at 195.860 kb on + strand, within GFF1597at 195.860 kb on + strand, within GFF1597at 195.860 kb on + strand, within GFF1597at 195.861 kb on - strand, within GFF1597at 195.861 kb on - strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.867 kb on - strand, within GFF1597at 195.867 kb on - strand, within GFF1597at 195.867 kb on - strand, within GFF1597at 195.941 kb on + strand, within GFF1597at 195.941 kb on + strand, within GFF1597at 195.941 kb on + strand, within GFF1597at 195.941 kb on + strand, within GFF1597at 195.942 kb on - strand, within GFF1597at 195.942 kb on - strand, within GFF1597at 195.942 kb on - strand, within GFF1597at 195.942 kb on - strand, within GFF1597at 195.942 kb on - strand, within GFF1597at 196.223 kb on + strand, within GFF1597at 196.224 kb on - strand, within GFF1597at 196.391 kb on + strand, within GFF1597at 196.391 kb on + strand, within GFF1597at 196.391 kb on + strand, within GFF1597at 196.392 kb on - strand, within GFF1597at 196.403 kb on - strandat 196.403 kb on - strandat 196.583 kb on + strandat 196.584 kb on - strandat 196.584 kb on - strandat 196.584 kb on - strandat 196.605 kb on + strandat 196.609 kb on + strandat 196.733 kb on + strandat 196.733 kb on + strandat 196.751 kb on + strandat 196.752 kb on - strandat 196.752 kb on - strandat 196.752 kb on - strandat 196.752 kb on - strandat 196.826 kb on - strand, within GFF1598at 197.012 kb on + strand, within GFF1598at 197.012 kb on + strand, within GFF1598at 197.013 kb on - strand, within GFF1598at 197.431 kb on + strand, within GFF1599at 197.461 kb on + strand, within GFF1599at 197.461 kb on + strand, within GFF1599at 197.461 kb on + strand, within GFF1599at 197.462 kb on - strand, within GFF1599at 197.462 kb on - strand, within GFF1599at 197.500 kb on + strand, within GFF1599at 197.518 kb on + strand, within GFF1599at 197.518 kb on + strand, within GFF1599at 197.518 kb on + strand, within GFF1599at 197.518 kb on + strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.717 kb on - strand, within GFF1599at 197.860 kb on + strand, within GFF1599at 197.887 kb on + strand, within GFF1599at 197.983 kb on + strand, within GFF1599at 197.984 kb on - strand, within GFF1599at 197.984 kb on - strand, within GFF1599at 197.999 kb on - strand, within GFF1599at 197.999 kb on - strand, within GFF1599at 197.999 kb on - strand, within GFF1599at 197.999 kb on - strand, within GFF1599at 197.999 kb on - strand, within GFF1599at 198.073 kb on + strandat 198.073 kb on + strandat 198.074 kb on - strandat 198.074 kb on - strandat 198.074 kb on - strandat 198.106 kb on + strandat 198.106 kb on + strandat 198.107 kb on - strandat 198.107 kb on - strandat 198.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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195,860 + GFF1597 0.60 +0.5
195,860 + GFF1597 0.60 +0.0
195,860 + GFF1597 0.60 -0.1
195,861 - GFF1597 0.60 +0.2
195,861 - GFF1597 0.60 -0.2
195,866 + GFF1597 0.61 +0.4
195,866 + GFF1597 0.61 -0.3
195,866 + GFF1597 0.61 -0.6
195,866 + GFF1597 0.61 -1.8
195,866 + GFF1597 0.61 -0.0
195,866 + GFF1597 0.61 -0.2
195,867 - GFF1597 0.61 +1.0
195,867 - GFF1597 0.61 -1.1
195,867 - GFF1597 0.61 -0.2
195,941 + GFF1597 0.65 -0.6
195,941 + GFF1597 0.65 -1.1
195,941 + GFF1597 0.65 +0.6
195,941 + GFF1597 0.65 -0.6
195,942 - GFF1597 0.65 -0.2
195,942 - GFF1597 0.65 -0.3
195,942 - GFF1597 0.65 -0.4
195,942 - GFF1597 0.65 +0.4
195,942 - GFF1597 0.65 -0.5
196,223 + GFF1597 0.80 -0.1
196,224 - GFF1597 0.80 -0.5
196,391 + GFF1597 0.90 -1.0
196,391 + GFF1597 0.90 -0.1
196,391 + GFF1597 0.90 -0.2
196,392 - GFF1597 0.90 -0.2
196,403 - -0.3
196,403 - +0.0
196,583 + -0.9
196,584 - -0.8
196,584 - +0.1
196,584 - -1.3
196,605 + -0.2
196,609 + +0.5
196,733 + -0.9
196,733 + -0.3
196,751 + -1.1
196,752 - -0.8
196,752 - -0.6
196,752 - -0.7
196,752 - +0.3
196,826 - GFF1598 0.19 -1.8
197,012 + GFF1598 0.66 -0.3
197,012 + GFF1598 0.66 -0.3
197,013 - GFF1598 0.66 -0.6
197,431 + GFF1599 0.29 -0.2
197,461 + GFF1599 0.33 -0.2
197,461 + GFF1599 0.33 -0.0
197,461 + GFF1599 0.33 -1.9
197,462 - GFF1599 0.33 +0.1
197,462 - GFF1599 0.33 -0.1
197,500 + GFF1599 0.37 -0.4
197,518 + GFF1599 0.38 +0.2
197,518 + GFF1599 0.38 -1.3
197,518 + GFF1599 0.38 -0.2
197,518 + GFF1599 0.38 -0.0
197,519 - GFF1599 0.38 -0.8
197,519 - GFF1599 0.38 -1.7
197,519 - GFF1599 0.38 -0.2
197,519 - GFF1599 0.38 +0.7
197,519 - GFF1599 0.38 -0.1
197,519 - GFF1599 0.38 -0.6
197,519 - GFF1599 0.38 +0.7
197,717 - GFF1599 0.59 -0.2
197,860 + GFF1599 0.74 -0.6
197,887 + GFF1599 0.76 -0.4
197,983 + GFF1599 0.86 -0.9
197,984 - GFF1599 0.86 -0.0
197,984 - GFF1599 0.86 -0.3
197,999 - GFF1599 0.88 -2.0
197,999 - GFF1599 0.88 -0.1
197,999 - GFF1599 0.88 -0.1
197,999 - GFF1599 0.88 +1.3
197,999 - GFF1599 0.88 +1.3
198,073 + -0.1
198,073 + +0.1
198,074 - +0.5
198,074 - -0.4
198,074 - -0.7
198,106 + +0.2
198,106 + -0.8
198,107 - -0.1
198,107 - +0.7
198,107 - +0.9

Or see this region's nucleotide sequence