Strain Fitness in Variovorax sp. SCN45 around GFF1596

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1595 and GFF1596 are separated by 75 nucleotidesGFF1596 and GFF1597 are separated by 24 nucleotides GFF1595 - Transcriptional regulator, AraC family, at 192,877 to 193,851 GFF1595 GFF1596 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 193,927 to 194,745 GFF1596 GFF1597 - Acetolactate synthase large subunit (EC 2.2.1.6), at 194,770 to 196,578 GFF1597 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 193.001 kb on + strand, within GFF1595at 193.059 kb on + strand, within GFF1595at 193.060 kb on - strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.491 kb on - strand, within GFF1595at 193.491 kb on - strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.734 kb on - strand, within GFF1595at 193.837 kb on + strandat 193.895 kb on + strandat 193.896 kb on - strandat 193.896 kb on - strandat 193.896 kb on - strandat 193.896 kb on - strandat 193.937 kb on + strandat 194.117 kb on + strand, within GFF1596at 194.117 kb on + strand, within GFF1596at 194.117 kb on + strand, within GFF1596at 194.118 kb on - strand, within GFF1596at 194.249 kb on + strand, within GFF1596at 194.249 kb on + strand, within GFF1596at 194.250 kb on - strand, within GFF1596at 194.359 kb on + strand, within GFF1596at 194.359 kb on + strand, within GFF1596at 194.359 kb on + strand, within GFF1596at 194.360 kb on - strand, within GFF1596at 194.360 kb on - strand, within GFF1596at 194.360 kb on - strand, within GFF1596at 194.456 kb on - strand, within GFF1596at 194.456 kb on - strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.744 kb on - strandat 194.996 kb on + strand, within GFF1597at 194.997 kb on - strand, within GFF1597at 194.997 kb on - strand, within GFF1597at 195.057 kb on - strand, within GFF1597at 195.095 kb on + strand, within GFF1597at 195.095 kb on + strand, within GFF1597at 195.096 kb on - strand, within GFF1597at 195.096 kb on - strand, within GFF1597at 195.273 kb on - strand, within GFF1597at 195.317 kb on + strand, within GFF1597at 195.317 kb on + strand, within GFF1597at 195.317 kb on + strand, within GFF1597at 195.317 kb on + strand, within GFF1597at 195.318 kb on - strand, within GFF1597at 195.318 kb on - strand, within GFF1597at 195.398 kb on + strand, within GFF1597at 195.399 kb on - strand, within GFF1597

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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193,001 + GFF1595 0.13 +0.4
193,059 + GFF1595 0.19 +0.1
193,060 - GFF1595 0.19 -1.8
193,088 + GFF1595 0.22 +0.1
193,088 + GFF1595 0.22 -1.2
193,088 + GFF1595 0.22 -1.5
193,088 + GFF1595 0.22 -0.6
193,088 + GFF1595 0.22 -0.1
193,089 - GFF1595 0.22 -0.2
193,089 - GFF1595 0.22 +0.3
193,089 - GFF1595 0.22 +0.2
193,089 - GFF1595 0.22 -0.3
193,089 - GFF1595 0.22 -1.1
193,089 - GFF1595 0.22 -0.7
193,089 - GFF1595 0.22 +0.1
193,089 - GFF1595 0.22 -0.8
193,491 - GFF1595 0.63 -0.6
193,491 - GFF1595 0.63 -0.4
193,639 + GFF1595 0.78 +0.1
193,639 + GFF1595 0.78 -0.3
193,639 + GFF1595 0.78 -0.5
193,639 + GFF1595 0.78 -1.1
193,639 + GFF1595 0.78 -0.3
193,639 + GFF1595 0.78 -0.3
193,639 + GFF1595 0.78 -0.5
193,639 + GFF1595 0.78 -1.5
193,639 + GFF1595 0.78 -0.1
193,639 + GFF1595 0.78 -0.4
193,639 + GFF1595 0.78 +1.1
193,639 + GFF1595 0.78 +0.5
193,639 + GFF1595 0.78 -0.1
193,640 - GFF1595 0.78 -0.5
193,640 - GFF1595 0.78 -0.0
193,640 - GFF1595 0.78 -0.3
193,640 - GFF1595 0.78 -0.6
193,640 - GFF1595 0.78 -0.8
193,640 - GFF1595 0.78 -0.4
193,640 - GFF1595 0.78 -1.0
193,640 - GFF1595 0.78 -0.1
193,640 - GFF1595 0.78 +0.1
193,640 - GFF1595 0.78 +1.7
193,640 - GFF1595 0.78 -1.1
193,640 - GFF1595 0.78 +0.1
193,640 - GFF1595 0.78 +0.0
193,640 - GFF1595 0.78 -0.5
193,640 - GFF1595 0.78 -0.1
193,643 + GFF1595 0.79 -0.2
193,643 + GFF1595 0.79 +0.6
193,643 + GFF1595 0.79 -0.5
193,643 + GFF1595 0.79 +0.4
193,643 + GFF1595 0.79 -0.4
193,643 + GFF1595 0.79 +0.5
193,644 - GFF1595 0.79 +0.4
193,644 - GFF1595 0.79 -0.8
193,644 - GFF1595 0.79 -0.2
193,644 - GFF1595 0.79 -0.2
193,644 - GFF1595 0.79 +0.1
193,644 - GFF1595 0.79 -0.1
193,644 - GFF1595 0.79 -0.2
193,734 - GFF1595 0.88 -0.6
193,837 + -0.3
193,895 + -0.3
193,896 - -0.6
193,896 - -0.0
193,896 - +0.9
193,896 - -0.1
193,937 + -0.1
194,117 + GFF1596 0.23 -0.3
194,117 + GFF1596 0.23 +2.3
194,117 + GFF1596 0.23 +0.1
194,118 - GFF1596 0.23 +1.7
194,249 + GFF1596 0.39 +1.0
194,249 + GFF1596 0.39 -1.0
194,250 - GFF1596 0.39 -0.4
194,359 + GFF1596 0.53 -0.9
194,359 + GFF1596 0.53 -0.3
194,359 + GFF1596 0.53 -0.9
194,360 - GFF1596 0.53 -0.3
194,360 - GFF1596 0.53 +0.7
194,360 - GFF1596 0.53 -0.1
194,456 - GFF1596 0.65 +1.1
194,456 - GFF1596 0.65 +1.1
194,530 + GFF1596 0.74 -0.5
194,530 + GFF1596 0.74 -0.5
194,530 + GFF1596 0.74 -0.2
194,530 + GFF1596 0.74 +1.3
194,531 - GFF1596 0.74 -0.9
194,531 - GFF1596 0.74 +0.5
194,531 - GFF1596 0.74 +0.3
194,531 - GFF1596 0.74 +0.8
194,531 - GFF1596 0.74 -0.4
194,531 - GFF1596 0.74 +0.2
194,531 - GFF1596 0.74 -0.3
194,531 - GFF1596 0.74 +0.2
194,531 - GFF1596 0.74 +0.6
194,744 - -0.2
194,996 + GFF1597 0.12 -1.5
194,997 - GFF1597 0.13 -0.5
194,997 - GFF1597 0.13 -2.7
195,057 - GFF1597 0.16 -0.0
195,095 + GFF1597 0.18 +0.1
195,095 + GFF1597 0.18 -0.5
195,096 - GFF1597 0.18 -0.6
195,096 - GFF1597 0.18 -0.9
195,273 - GFF1597 0.28 +0.0
195,317 + GFF1597 0.30 -0.5
195,317 + GFF1597 0.30 -0.2
195,317 + GFF1597 0.30 -1.1
195,317 + GFF1597 0.30 -0.3
195,318 - GFF1597 0.30 +0.2
195,318 - GFF1597 0.30 -0.1
195,398 + GFF1597 0.35 -0.4
195,399 - GFF1597 0.35 +0.7

Or see this region's nucleotide sequence