Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1532 and GFF1533 are separated by 112 nucleotides GFF1533 and GFF1534 are separated by 33 nucleotides
GFF1532 - hypothetical protein, at 129,950 to 130,957
GFF1532
GFF1533 - no description, at 131,070 to 131,960
GFF1533
GFF1534 - Transcriptional regulator, LysR family, at 131,994 to 132,896
GFF1534
Position (kb) 131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.266 kb on + strand, within GFF1532 at 130.266 kb on + strand, within GFF1532 at 130.267 kb on - strand, within GFF1532 at 130.465 kb on - strand, within GFF1532 at 130.465 kb on - strand, within GFF1532 at 130.465 kb on - strand, within GFF1532 at 130.465 kb on - strand, within GFF1532 at 130.494 kb on + strand, within GFF1532 at 130.495 kb on - strand, within GFF1532 at 131.412 kb on + strand, within GFF1533 at 131.412 kb on + strand, within GFF1533 at 131.415 kb on + strand, within GFF1533 at 131.415 kb on + strand, within GFF1533 at 131.533 kb on - strand, within GFF1533 at 131.533 kb on - strand, within GFF1533 at 131.737 kb on - strand, within GFF1533 at 132.097 kb on + strand, within GFF1534 at 132.097 kb on + strand, within GFF1534 at 132.097 kb on + strand, within GFF1534 at 132.224 kb on - strand, within GFF1534 at 132.316 kb on + strand, within GFF1534 at 132.316 kb on + strand, within GFF1534 at 132.317 kb on - strand, within GFF1534 at 132.682 kb on + strand, within GFF1534 at 132.682 kb on + strand, within GFF1534 at 132.710 kb on + strand, within GFF1534 at 132.710 kb on + strand, within GFF1534 at 132.710 kb on + strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 130,266 + GFF1532 0.31 +0.1 130,266 + GFF1532 0.31 +0.8 130,267 - GFF1532 0.31 -0.6 130,465 - GFF1532 0.51 -0.9 130,465 - GFF1532 0.51 +0.9 130,465 - GFF1532 0.51 +0.2 130,465 - GFF1532 0.51 +0.3 130,494 + GFF1532 0.54 +0.6 130,495 - GFF1532 0.54 -1.2 131,412 + GFF1533 0.38 -0.1 131,412 + GFF1533 0.38 +2.6 131,415 + GFF1533 0.39 -1.8 131,415 + GFF1533 0.39 +0.6 131,533 - GFF1533 0.52 -0.4 131,533 - GFF1533 0.52 +0.6 131,737 - GFF1533 0.75 +0.5 132,097 + GFF1534 0.11 -0.3 132,097 + GFF1534 0.11 -0.4 132,097 + GFF1534 0.11 -1.4 132,224 - GFF1534 0.25 -1.5 132,316 + GFF1534 0.36 +0.1 132,316 + GFF1534 0.36 +0.2 132,317 - GFF1534 0.36 -0.1 132,682 + GFF1534 0.76 -1.1 132,682 + GFF1534 0.76 -1.6 132,710 + GFF1534 0.79 -0.6 132,710 + GFF1534 0.79 -0.1 132,710 + GFF1534 0.79 -0.2 132,711 - GFF1534 0.79 -1.9 132,711 - GFF1534 0.79 +0.4 132,711 - GFF1534 0.79 -0.3 132,711 - GFF1534 0.79 +0.1 132,908 - -1.4
Or see this region's nucleotide sequence