Strain Fitness in Variovorax sp. SCN45 around GFF1522

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1521 and GFF1522 are separated by 90 nucleotidesGFF1522 and GFF1523 are separated by 58 nucleotides GFF1521 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 115,866 to 116,885 GFF1521 GFF1522 - Ferrichrome-iron receptor, at 116,976 to 119,423 GFF1522 GFF1523 - KEGG: transmembrane sensor, at 119,482 to 120,495 GFF1523 Position (kb) 116 117 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2 3at 116.038 kb on + strand, within GFF1521at 116.038 kb on + strand, within GFF1521at 116.196 kb on + strand, within GFF1521at 116.358 kb on + strand, within GFF1521at 116.413 kb on - strand, within GFF1521at 116.413 kb on - strand, within GFF1521at 116.413 kb on - strand, within GFF1521at 116.415 kb on - strand, within GFF1521at 116.472 kb on + strand, within GFF1521at 116.559 kb on + strand, within GFF1521at 116.559 kb on + strand, within GFF1521at 116.559 kb on + strand, within GFF1521at 116.559 kb on + strand, within GFF1521at 116.559 kb on + strand, within GFF1521at 116.559 kb on + strand, within GFF1521at 116.560 kb on - strand, within GFF1521at 116.560 kb on - strand, within GFF1521at 116.583 kb on + strand, within GFF1521at 116.583 kb on + strand, within GFF1521at 116.583 kb on + strand, within GFF1521at 116.583 kb on + strand, within GFF1521at 116.583 kb on + strand, within GFF1521at 116.583 kb on + strand, within GFF1521at 116.584 kb on - strand, within GFF1521at 116.584 kb on - strand, within GFF1521at 116.584 kb on - strand, within GFF1521at 116.584 kb on - strand, within GFF1521at 116.584 kb on - strand, within GFF1521at 116.584 kb on - strand, within GFF1521at 116.817 kb on + strandat 116.818 kb on - strandat 116.987 kb on - strandat 116.987 kb on - strandat 117.052 kb on + strandat 117.052 kb on + strandat 117.052 kb on + strandat 117.053 kb on - strandat 117.053 kb on - strandat 117.053 kb on - strandat 117.110 kb on - strandat 117.172 kb on + strandat 117.187 kb on + strandat 117.188 kb on - strandat 117.242 kb on - strand, within GFF1522at 117.242 kb on - strand, within GFF1522at 117.242 kb on - strand, within GFF1522at 117.340 kb on + strand, within GFF1522at 117.340 kb on + strand, within GFF1522at 117.340 kb on + strand, within GFF1522at 117.340 kb on + strand, within GFF1522at 117.340 kb on + strand, within GFF1522at 117.340 kb on + strand, within GFF1522at 117.341 kb on - strand, within GFF1522at 117.341 kb on - strand, within GFF1522at 117.427 kb on + strand, within GFF1522at 117.428 kb on - strand, within GFF1522at 117.428 kb on - strand, within GFF1522at 117.430 kb on + strand, within GFF1522at 117.430 kb on + strand, within GFF1522at 117.430 kb on + strand, within GFF1522at 117.431 kb on - strand, within GFF1522at 117.524 kb on - strand, within GFF1522at 117.524 kb on - strand, within GFF1522at 117.577 kb on + strand, within GFF1522at 117.577 kb on + strand, within GFF1522at 117.577 kb on + strand, within GFF1522at 117.578 kb on - strand, within GFF1522at 117.578 kb on - strand, within GFF1522at 117.616 kb on + strand, within GFF1522at 117.616 kb on + strand, within GFF1522at 117.616 kb on + strand, within GFF1522at 117.617 kb on - strand, within GFF1522at 117.617 kb on - strand, within GFF1522at 117.625 kb on + strand, within GFF1522at 117.625 kb on + strand, within GFF1522at 117.625 kb on + strand, within GFF1522at 117.625 kb on + strand, within GFF1522at 117.625 kb on + strand, within GFF1522at 117.626 kb on - strand, within GFF1522at 117.626 kb on - strand, within GFF1522at 117.626 kb on - strand, within GFF1522at 117.626 kb on - strand, within GFF1522at 117.652 kb on + strand, within GFF1522at 117.652 kb on + strand, within GFF1522at 117.652 kb on + strand, within GFF1522at 117.652 kb on + strand, within GFF1522at 117.652 kb on + strand, within GFF1522at 117.653 kb on - strand, within GFF1522at 117.653 kb on - strand, within GFF1522at 117.802 kb on + strand, within GFF1522at 117.802 kb on + strand, within GFF1522at 117.802 kb on + strand, within GFF1522at 117.802 kb on + strand, within GFF1522at 117.803 kb on - strand, within GFF1522at 117.803 kb on - strand, within GFF1522at 117.803 kb on - strand, within GFF1522at 117.875 kb on - strand, within GFF1522at 118.108 kb on + strand, within GFF1522at 118.108 kb on + strand, within GFF1522at 118.108 kb on + strand, within GFF1522at 118.219 kb on + strand, within GFF1522at 118.285 kb on + strand, within GFF1522at 118.285 kb on + strand, within GFF1522at 118.285 kb on + strand, within GFF1522at 118.286 kb on - strand, within GFF1522at 118.286 kb on - strand, within GFF1522at 118.295 kb on - strand, within GFF1522at 118.381 kb on + strand, within GFF1522at 118.381 kb on + strand, within GFF1522at 118.382 kb on - strand, within GFF1522at 118.382 kb on - strand, within GFF1522at 118.417 kb on + strand, within GFF1522at 118.417 kb on + strand, within GFF1522at 118.417 kb on + strand, within GFF1522at 118.417 kb on + strand, within GFF1522at 118.418 kb on - strand, within GFF1522at 118.418 kb on - strand, within GFF1522at 118.418 kb on - strand, within GFF1522at 118.418 kb on - strand, within GFF1522at 118.418 kb on - strand, within GFF1522at 118.462 kb on + strand, within GFF1522at 118.462 kb on + strand, within GFF1522at 118.618 kb on + strand, within GFF1522at 118.618 kb on + strand, within GFF1522at 118.726 kb on + strand, within GFF1522at 118.726 kb on + strand, within GFF1522at 118.727 kb on - strand, within GFF1522at 118.727 kb on - strand, within GFF1522at 118.747 kb on + strand, within GFF1522at 118.747 kb on + strand, within GFF1522at 118.747 kb on + strand, within GFF1522at 118.796 kb on - strand, within GFF1522at 118.796 kb on - strand, within GFF1522at 118.796 kb on - strand, within GFF1522at 118.822 kb on + strand, within GFF1522at 119.077 kb on + strand, within GFF1522at 119.077 kb on + strand, within GFF1522at 119.077 kb on + strand, within GFF1522at 119.077 kb on + strand, within GFF1522at 119.077 kb on + strand, within GFF1522at 119.077 kb on + strand, within GFF1522at 119.077 kb on + strand, within GFF1522at 119.078 kb on - strand, within GFF1522at 119.078 kb on - strand, within GFF1522at 119.078 kb on - strand, within GFF1522at 119.078 kb on - strand, within GFF1522at 119.078 kb on - strand, within GFF1522at 119.152 kb on + strand, within GFF1522at 119.152 kb on + strand, within GFF1522at 119.152 kb on + strand, within GFF1522at 119.152 kb on + strand, within GFF1522at 119.153 kb on - strand, within GFF1522at 119.153 kb on - strand, within GFF1522at 119.934 kb on - strand, within GFF1523at 119.934 kb on - strand, within GFF1523at 119.934 kb on - strand, within GFF1523

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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116,038 + GFF1521 0.17 -0.2
116,038 + GFF1521 0.17 +0.1
116,196 + GFF1521 0.32 -0.2
116,358 + GFF1521 0.48 -1.1
116,413 - GFF1521 0.54 +0.1
116,413 - GFF1521 0.54 -0.7
116,413 - GFF1521 0.54 +0.2
116,415 - GFF1521 0.54 -0.4
116,472 + GFF1521 0.59 +1.3
116,559 + GFF1521 0.68 -0.9
116,559 + GFF1521 0.68 -0.6
116,559 + GFF1521 0.68 -0.7
116,559 + GFF1521 0.68 -0.2
116,559 + GFF1521 0.68 +0.3
116,559 + GFF1521 0.68 -0.9
116,560 - GFF1521 0.68 -0.4
116,560 - GFF1521 0.68 +0.4
116,583 + GFF1521 0.70 -0.4
116,583 + GFF1521 0.70 +0.2
116,583 + GFF1521 0.70 -0.2
116,583 + GFF1521 0.70 -0.8
116,583 + GFF1521 0.70 +1.1
116,583 + GFF1521 0.70 -1.1
116,584 - GFF1521 0.70 -0.7
116,584 - GFF1521 0.70 -0.4
116,584 - GFF1521 0.70 -1.6
116,584 - GFF1521 0.70 -0.9
116,584 - GFF1521 0.70 +0.5
116,584 - GFF1521 0.70 -0.2
116,817 + -0.2
116,818 - -0.5
116,987 - -1.4
116,987 - -0.3
117,052 + +0.2
117,052 + -0.1
117,052 + -1.3
117,053 - -0.3
117,053 - -0.4
117,053 - +0.1
117,110 - -0.3
117,172 + +1.6
117,187 + -0.2
117,188 - +0.0
117,242 - GFF1522 0.11 +1.0
117,242 - GFF1522 0.11 -0.5
117,242 - GFF1522 0.11 +0.8
117,340 + GFF1522 0.15 +0.1
117,340 + GFF1522 0.15 -0.1
117,340 + GFF1522 0.15 +0.6
117,340 + GFF1522 0.15 -1.0
117,340 + GFF1522 0.15 -0.6
117,340 + GFF1522 0.15 -0.3
117,341 - GFF1522 0.15 -0.5
117,341 - GFF1522 0.15 -0.7
117,427 + GFF1522 0.18 +1.8
117,428 - GFF1522 0.18 -0.2
117,428 - GFF1522 0.18 +0.2
117,430 + GFF1522 0.19 -0.6
117,430 + GFF1522 0.19 -0.2
117,430 + GFF1522 0.19 +1.2
117,431 - GFF1522 0.19 +0.1
117,524 - GFF1522 0.22 -1.1
117,524 - GFF1522 0.22 +0.8
117,577 + GFF1522 0.25 -0.1
117,577 + GFF1522 0.25 -0.4
117,577 + GFF1522 0.25 -0.7
117,578 - GFF1522 0.25 -0.1
117,578 - GFF1522 0.25 +0.5
117,616 + GFF1522 0.26 -0.4
117,616 + GFF1522 0.26 +0.2
117,616 + GFF1522 0.26 +0.4
117,617 - GFF1522 0.26 -0.0
117,617 - GFF1522 0.26 -0.5
117,625 + GFF1522 0.27 +0.6
117,625 + GFF1522 0.27 -0.9
117,625 + GFF1522 0.27 -0.2
117,625 + GFF1522 0.27 -1.2
117,625 + GFF1522 0.27 +0.5
117,626 - GFF1522 0.27 -0.5
117,626 - GFF1522 0.27 -0.2
117,626 - GFF1522 0.27 -0.0
117,626 - GFF1522 0.27 -0.5
117,652 + GFF1522 0.28 +0.0
117,652 + GFF1522 0.28 -0.1
117,652 + GFF1522 0.28 +0.7
117,652 + GFF1522 0.28 +0.8
117,652 + GFF1522 0.28 -1.4
117,653 - GFF1522 0.28 -0.2
117,653 - GFF1522 0.28 -0.5
117,802 + GFF1522 0.34 -0.3
117,802 + GFF1522 0.34 -2.4
117,802 + GFF1522 0.34 -0.4
117,802 + GFF1522 0.34 +0.1
117,803 - GFF1522 0.34 +0.3
117,803 - GFF1522 0.34 -0.7
117,803 - GFF1522 0.34 -0.3
117,875 - GFF1522 0.37 -0.9
118,108 + GFF1522 0.46 -1.4
118,108 + GFF1522 0.46 -0.9
118,108 + GFF1522 0.46 +1.1
118,219 + GFF1522 0.51 -0.5
118,285 + GFF1522 0.53 -0.5
118,285 + GFF1522 0.53 -0.0
118,285 + GFF1522 0.53 -0.4
118,286 - GFF1522 0.54 +0.3
118,286 - GFF1522 0.54 -0.9
118,295 - GFF1522 0.54 +1.6
118,381 + GFF1522 0.57 +0.6
118,381 + GFF1522 0.57 -0.1
118,382 - GFF1522 0.57 -0.9
118,382 - GFF1522 0.57 -0.0
118,417 + GFF1522 0.59 -0.2
118,417 + GFF1522 0.59 +0.6
118,417 + GFF1522 0.59 -0.4
118,417 + GFF1522 0.59 +0.1
118,418 - GFF1522 0.59 -0.5
118,418 - GFF1522 0.59 -0.1
118,418 - GFF1522 0.59 +1.2
118,418 - GFF1522 0.59 -0.1
118,418 - GFF1522 0.59 +0.3
118,462 + GFF1522 0.61 -0.8
118,462 + GFF1522 0.61 +0.1
118,618 + GFF1522 0.67 +0.1
118,618 + GFF1522 0.67 -0.4
118,726 + GFF1522 0.71 +0.6
118,726 + GFF1522 0.71 -0.1
118,727 - GFF1522 0.72 +0.0
118,727 - GFF1522 0.72 -1.0
118,747 + GFF1522 0.72 -0.7
118,747 + GFF1522 0.72 +1.1
118,747 + GFF1522 0.72 +1.4
118,796 - GFF1522 0.74 -0.5
118,796 - GFF1522 0.74 -0.5
118,796 - GFF1522 0.74 +0.2
118,822 + GFF1522 0.75 -0.5
119,077 + GFF1522 0.86 +2.1
119,077 + GFF1522 0.86 +0.2
119,077 + GFF1522 0.86 -0.0
119,077 + GFF1522 0.86 +0.1
119,077 + GFF1522 0.86 +0.5
119,077 + GFF1522 0.86 +0.0
119,077 + GFF1522 0.86 +2.8
119,078 - GFF1522 0.86 -0.4
119,078 - GFF1522 0.86 +0.0
119,078 - GFF1522 0.86 +0.6
119,078 - GFF1522 0.86 +0.3
119,078 - GFF1522 0.86 -0.5
119,152 + GFF1522 0.89 -0.4
119,152 + GFF1522 0.89 +0.6
119,152 + GFF1522 0.89 -0.6
119,152 + GFF1522 0.89 +1.2
119,153 - GFF1522 0.89 +0.6
119,153 - GFF1522 0.89 -0.3
119,934 - GFF1523 0.45 -0.1
119,934 - GFF1523 0.45 +0.4
119,934 - GFF1523 0.45 +0.0

Or see this region's nucleotide sequence