Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1508 and GFF1509 overlap by 4 nucleotides GFF1509 and GFF1510 overlap by 4 nucleotides GFF1510 and GFF1511 are separated by 8 nucleotides
GFF1508 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 101,440 to 102,339
GFF1508
GFF1509 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 102,336 to 103,310
GFF1509
GFF1510 - Oxidoreductase, at 103,307 to 104,797
GFF1510
GFF1511 - Transcriptional regulator, LysR family, at 104,806 to 105,795
GFF1511
Position (kb) 103
104
105 Strain fitness (log2 ratio) -1
0
1
2 at 102.321 kb on - strand at 102.321 kb on - strand at 102.379 kb on + strand at 102.380 kb on - strand at 102.380 kb on - strand at 102.380 kb on - strand at 102.436 kb on + strand, within GFF1509 at 102.437 kb on - strand, within GFF1509 at 102.437 kb on - strand, within GFF1509 at 102.437 kb on - strand, within GFF1509 at 102.655 kb on + strand, within GFF1509 at 102.656 kb on - strand, within GFF1509 at 102.656 kb on - strand, within GFF1509 at 102.656 kb on - strand, within GFF1509 at 103.120 kb on + strand, within GFF1509 at 103.351 kb on - strand at 103.404 kb on + strand at 103.404 kb on + strand at 103.405 kb on - strand at 103.542 kb on + strand, within GFF1510 at 103.542 kb on + strand, within GFF1510 at 103.543 kb on - strand, within GFF1510 at 103.543 kb on - strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.923 kb on + strand, within GFF1510 at 103.924 kb on - strand, within GFF1510 at 103.924 kb on - strand, within GFF1510 at 103.924 kb on - strand, within GFF1510 at 103.924 kb on - strand, within GFF1510 at 104.268 kb on + strand, within GFF1510 at 104.268 kb on + strand, within GFF1510 at 104.268 kb on + strand, within GFF1510 at 104.268 kb on + strand, within GFF1510 at 104.269 kb on - strand, within GFF1510 at 104.397 kb on + strand, within GFF1510 at 104.397 kb on + strand, within GFF1510 at 104.592 kb on + strand, within GFF1510 at 104.592 kb on + strand, within GFF1510 at 104.592 kb on + strand, within GFF1510 at 104.592 kb on + strand, within GFF1510 at 104.593 kb on - strand, within GFF1510 at 104.593 kb on - strand, within GFF1510 at 104.850 kb on - strand at 105.004 kb on - strand, within GFF1511 at 105.602 kb on + strand, within GFF1511 at 105.602 kb on + strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.603 kb on - strand, within GFF1511 at 105.663 kb on - strand, within GFF1511 at 105.666 kb on + strand, within GFF1511
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 102,321 - +0.2 102,321 - -0.2 102,379 + -0.4 102,380 - +1.1 102,380 - +0.2 102,380 - +0.1 102,436 + GFF1509 0.10 -0.9 102,437 - GFF1509 0.10 -0.2 102,437 - GFF1509 0.10 -0.3 102,437 - GFF1509 0.10 -0.7 102,655 + GFF1509 0.33 +0.6 102,656 - GFF1509 0.33 -0.9 102,656 - GFF1509 0.33 -0.9 102,656 - GFF1509 0.33 -0.5 103,120 + GFF1509 0.80 -0.3 103,351 - +0.6 103,404 + -0.4 103,404 + +0.1 103,405 - +0.5 103,542 + GFF1510 0.16 +0.1 103,542 + GFF1510 0.16 -0.5 103,543 - GFF1510 0.16 -0.5 103,543 - GFF1510 0.16 -0.5 103,923 + GFF1510 0.41 -0.4 103,923 + GFF1510 0.41 -1.0 103,923 + GFF1510 0.41 +0.4 103,923 + GFF1510 0.41 +0.2 103,923 + GFF1510 0.41 +0.7 103,923 + GFF1510 0.41 +0.6 103,923 + GFF1510 0.41 +2.1 103,924 - GFF1510 0.41 -0.7 103,924 - GFF1510 0.41 +0.6 103,924 - GFF1510 0.41 -0.0 103,924 - GFF1510 0.41 +0.9 104,268 + GFF1510 0.64 -0.2 104,268 + GFF1510 0.64 -0.7 104,268 + GFF1510 0.64 +1.3 104,268 + GFF1510 0.64 +0.0 104,269 - GFF1510 0.65 +1.4 104,397 + GFF1510 0.73 +0.1 104,397 + GFF1510 0.73 -0.3 104,592 + GFF1510 0.86 -0.2 104,592 + GFF1510 0.86 -0.6 104,592 + GFF1510 0.86 +0.6 104,592 + GFF1510 0.86 +0.6 104,593 - GFF1510 0.86 +0.1 104,593 - GFF1510 0.86 +0.5 104,850 - -0.1 105,004 - GFF1511 0.20 -0.4 105,602 + GFF1511 0.80 -0.7 105,602 + GFF1511 0.80 -0.4 105,603 - GFF1511 0.81 +0.1 105,603 - GFF1511 0.81 -0.2 105,603 - GFF1511 0.81 -1.5 105,603 - GFF1511 0.81 +0.4 105,603 - GFF1511 0.81 -0.9 105,603 - GFF1511 0.81 -0.3 105,603 - GFF1511 0.81 -1.3 105,663 - GFF1511 0.87 +0.1 105,666 + GFF1511 0.87 -0.6
Or see this region's nucleotide sequence