Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1486 and GFF1487 overlap by 4 nucleotides GFF1487 and GFF1488 are separated by 39 nucleotides GFF1488 and GFF1489 overlap by 4 nucleotides
GFF1486 - Tetrapartite efflux system, inner membrane component FusBC-like, at 78,609 to 80,672
GFF1486
GFF1487 - Tetrapartite efflux system component, FusD-like, at 80,669 to 80,875
GFF1487
GFF1488 - Tetrapartite efflux system, membrane fusion component FusE-like, at 80,915 to 81,913
GFF1488
GFF1489 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 81,910 to 83,373
GFF1489
Position (kb) 80
81
82 Strain fitness (log2 ratio) -1
0
1 at 80.013 kb on + strand, within GFF1486 at 80.013 kb on + strand, within GFF1486 at 80.013 kb on + strand, within GFF1486 at 80.215 kb on + strand, within GFF1486 at 80.215 kb on + strand, within GFF1486 at 80.216 kb on - strand, within GFF1486 at 80.216 kb on - strand, within GFF1486 at 80.287 kb on - strand, within GFF1486 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.697 kb on - strand, within GFF1487 at 80.697 kb on - strand, within GFF1487 at 80.822 kb on + strand, within GFF1487 at 80.822 kb on + strand, within GFF1487 at 81.510 kb on - strand, within GFF1488 at 81.561 kb on - strand, within GFF1488 at 81.561 kb on - strand, within GFF1488 at 81.834 kb on + strand at 81.835 kb on - strand at 81.835 kb on - strand at 81.905 kb on - strand at 82.105 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.301 kb on - strand, within GFF1489 at 82.324 kb on + strand, within GFF1489 at 82.348 kb on + strand, within GFF1489 at 82.471 kb on + strand, within GFF1489 at 82.472 kb on - strand, within GFF1489
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 80,013 + GFF1486 0.68 -0.8 80,013 + GFF1486 0.68 +0.1 80,013 + GFF1486 0.68 -0.2 80,215 + GFF1486 0.78 -0.4 80,215 + GFF1486 0.78 +0.0 80,216 - GFF1486 0.78 +0.3 80,216 - GFF1486 0.78 -0.7 80,287 - GFF1486 0.81 +0.7 80,696 + GFF1487 0.13 +1.3 80,696 + GFF1487 0.13 -0.4 80,696 + GFF1487 0.13 -0.4 80,696 + GFF1487 0.13 +0.8 80,696 + GFF1487 0.13 +0.6 80,696 + GFF1487 0.13 -0.7 80,697 - GFF1487 0.14 +0.2 80,697 - GFF1487 0.14 +1.1 80,822 + GFF1487 0.74 +0.3 80,822 + GFF1487 0.74 +0.4 81,510 - GFF1488 0.60 -0.7 81,561 - GFF1488 0.65 -0.6 81,561 - GFF1488 0.65 -0.3 81,834 + +0.1 81,835 - -1.4 81,835 - -0.3 81,905 - -0.5 82,105 + GFF1489 0.13 +0.2 82,300 + GFF1489 0.27 -0.7 82,300 + GFF1489 0.27 -1.2 82,300 + GFF1489 0.27 +0.7 82,301 - GFF1489 0.27 -0.2 82,324 + GFF1489 0.28 +0.3 82,348 + GFF1489 0.30 -0.8 82,471 + GFF1489 0.38 -0.4 82,472 - GFF1489 0.38 +0.1
Or see this region's nucleotide sequence