Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1465 and GFF1466 are separated by 192 nucleotides GFF1466 and GFF1467 are separated by 34 nucleotides GFF1467 and GFF1468 are separated by 104 nucleotides
GFF1465 - ABC transporter spermidine/putrescine-binding protein, at 57,440 to 58,489
GFF1465
GFF1466 - Quinone oxidoreductase (EC 1.6.5.5), at 58,682 to 59,662
GFF1466
GFF1467 - Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18), at 59,697 to 60,476
GFF1467
GFF1468 - Transcriptional regulator, GntR family, at 60,581 to 61,318
GFF1468
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1 at 58.069 kb on - strand, within GFF1465 at 58.071 kb on + strand, within GFF1465 at 58.072 kb on - strand, within GFF1465 at 58.072 kb on - strand, within GFF1465 at 58.132 kb on - strand, within GFF1465 at 58.167 kb on + strand, within GFF1465 at 58.167 kb on + strand, within GFF1465 at 58.167 kb on + strand, within GFF1465 at 58.167 kb on + strand, within GFF1465 at 58.168 kb on - strand, within GFF1465 at 58.290 kb on + strand, within GFF1465 at 58.350 kb on + strand, within GFF1465 at 58.350 kb on + strand, within GFF1465 at 58.350 kb on + strand, within GFF1465 at 58.350 kb on + strand, within GFF1465 at 58.351 kb on - strand, within GFF1465 at 58.351 kb on - strand, within GFF1465 at 58.351 kb on - strand, within GFF1465 at 58.386 kb on + strand at 58.386 kb on + strand at 58.387 kb on - strand at 58.387 kb on - strand at 58.611 kb on + strand at 58.611 kb on + strand at 58.623 kb on + strand at 58.653 kb on + strand at 58.653 kb on + strand at 58.653 kb on + strand at 58.653 kb on + strand at 58.653 kb on + strand at 58.820 kb on + strand, within GFF1466 at 58.820 kb on + strand, within GFF1466 at 58.820 kb on + strand, within GFF1466 at 58.821 kb on - strand, within GFF1466 at 58.821 kb on - strand, within GFF1466 at 58.821 kb on - strand, within GFF1466 at 58.952 kb on + strand, within GFF1466 at 58.952 kb on + strand, within GFF1466 at 58.952 kb on + strand, within GFF1466 at 58.952 kb on + strand, within GFF1466 at 58.953 kb on - strand, within GFF1466 at 58.970 kb on + strand, within GFF1466 at 59.093 kb on + strand, within GFF1466 at 59.093 kb on + strand, within GFF1466 at 59.093 kb on + strand, within GFF1466 at 59.094 kb on - strand, within GFF1466 at 59.261 kb on + strand, within GFF1466 at 59.261 kb on + strand, within GFF1466 at 59.261 kb on + strand, within GFF1466 at 59.262 kb on - strand, within GFF1466 at 59.328 kb on - strand, within GFF1466 at 59.740 kb on + strand at 59.741 kb on - strand at 59.772 kb on + strand at 59.823 kb on + strand, within GFF1467 at 59.823 kb on + strand, within GFF1467 at 59.824 kb on - strand, within GFF1467 at 59.824 kb on - strand, within GFF1467 at 59.925 kb on + strand, within GFF1467 at 59.926 kb on - strand, within GFF1467 at 59.926 kb on - strand, within GFF1467 at 60.155 kb on + strand, within GFF1467 at 60.540 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 58,069 - GFF1465 0.60 +0.8 58,071 + GFF1465 0.60 -0.9 58,072 - GFF1465 0.60 +0.1 58,072 - GFF1465 0.60 +0.4 58,132 - GFF1465 0.66 -0.7 58,167 + GFF1465 0.69 -0.3 58,167 + GFF1465 0.69 +0.3 58,167 + GFF1465 0.69 -0.5 58,167 + GFF1465 0.69 -0.6 58,168 - GFF1465 0.69 -0.8 58,290 + GFF1465 0.81 -0.4 58,350 + GFF1465 0.87 -1.8 58,350 + GFF1465 0.87 -0.7 58,350 + GFF1465 0.87 -2.7 58,350 + GFF1465 0.87 +0.2 58,351 - GFF1465 0.87 +0.1 58,351 - GFF1465 0.87 -0.8 58,351 - GFF1465 0.87 +0.3 58,386 + -1.4 58,386 + +0.5 58,387 - +0.4 58,387 - -0.3 58,611 + -0.2 58,611 + -1.5 58,623 + -0.4 58,653 + -0.5 58,653 + -0.1 58,653 + -0.8 58,653 + +0.5 58,653 + -0.3 58,820 + GFF1466 0.14 +0.1 58,820 + GFF1466 0.14 -0.4 58,820 + GFF1466 0.14 +1.3 58,821 - GFF1466 0.14 -0.3 58,821 - GFF1466 0.14 -0.2 58,821 - GFF1466 0.14 -0.7 58,952 + GFF1466 0.28 -0.5 58,952 + GFF1466 0.28 +1.6 58,952 + GFF1466 0.28 -0.5 58,952 + GFF1466 0.28 -0.4 58,953 - GFF1466 0.28 -1.5 58,970 + GFF1466 0.29 -1.4 59,093 + GFF1466 0.42 -0.1 59,093 + GFF1466 0.42 -1.6 59,093 + GFF1466 0.42 -1.5 59,094 - GFF1466 0.42 -0.6 59,261 + GFF1466 0.59 +0.1 59,261 + GFF1466 0.59 +1.2 59,261 + GFF1466 0.59 +1.6 59,262 - GFF1466 0.59 -1.0 59,328 - GFF1466 0.66 -0.2 59,740 + +1.3 59,741 - -0.1 59,772 + +0.1 59,823 + GFF1467 0.16 -0.1 59,823 + GFF1467 0.16 -0.2 59,824 - GFF1467 0.16 -0.2 59,824 - GFF1467 0.16 +0.6 59,925 + GFF1467 0.29 +0.1 59,926 - GFF1467 0.29 -0.2 59,926 - GFF1467 0.29 -0.4 60,155 + GFF1467 0.59 -0.7 60,540 + -0.7
Or see this region's nucleotide sequence