Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF142 and GFF143 overlap by 18 nucleotides GFF143 and GFF144 overlap by 4 nucleotides
GFF142 - Oxidoreductase, at 170,605 to 171,657
GFF142
GFF143 - Dethiobiotin synthase BioD (EC 6.3.3.3), at 171,640 to 172,386
GFF143
GFF144 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 172,383 to 173,621
GFF144
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.789 kb on - strand, within GFF142 at 171.076 kb on + strand, within GFF142 at 171.077 kb on - strand, within GFF142 at 171.077 kb on - strand, within GFF142 at 171.077 kb on - strand, within GFF142 at 171.077 kb on - strand, within GFF142 at 171.173 kb on - strand, within GFF142 at 171.173 kb on - strand, within GFF142 at 171.173 kb on - strand, within GFF142 at 171.173 kb on - strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.364 kb on + strand, within GFF142 at 171.365 kb on - strand, within GFF142 at 171.583 kb on + strand at 172.160 kb on + strand, within GFF143 at 172.160 kb on + strand, within GFF143 at 172.161 kb on - strand, within GFF143 at 172.798 kb on + strand, within GFF144 at 172.798 kb on + strand, within GFF144 at 172.798 kb on + strand, within GFF144 at 172.799 kb on - strand, within GFF144 at 172.822 kb on + strand, within GFF144 at 172.822 kb on + strand, within GFF144 at 173.037 kb on + strand, within GFF144 at 173.037 kb on + strand, within GFF144 at 173.038 kb on - strand, within GFF144 at 173.038 kb on - strand, within GFF144 at 173.038 kb on - strand, within GFF144 at 173.140 kb on + strand, within GFF144 at 173.262 kb on - strand, within GFF144 at 173.263 kb on + strand, within GFF144 at 173.263 kb on + strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 170,789 - GFF142 0.17 +0.3 171,076 + GFF142 0.45 -0.8 171,077 - GFF142 0.45 -0.4 171,077 - GFF142 0.45 +0.0 171,077 - GFF142 0.45 +0.6 171,077 - GFF142 0.45 -1.3 171,173 - GFF142 0.54 -0.5 171,173 - GFF142 0.54 -1.3 171,173 - GFF142 0.54 -0.5 171,173 - GFF142 0.54 -0.6 171,175 + GFF142 0.54 -0.1 171,175 + GFF142 0.54 -0.0 171,175 + GFF142 0.54 -0.7 171,175 + GFF142 0.54 -1.0 171,175 + GFF142 0.54 +2.3 171,175 + GFF142 0.54 -0.2 171,175 + GFF142 0.54 -0.3 171,175 + GFF142 0.54 -1.7 171,176 - GFF142 0.54 -0.1 171,176 - GFF142 0.54 -0.3 171,176 - GFF142 0.54 -0.9 171,176 - GFF142 0.54 +0.7 171,176 - GFF142 0.54 +1.0 171,176 - GFF142 0.54 +1.3 171,176 - GFF142 0.54 +0.2 171,176 - GFF142 0.54 -0.2 171,176 - GFF142 0.54 -0.4 171,176 - GFF142 0.54 -0.3 171,176 - GFF142 0.54 +0.4 171,364 + GFF142 0.72 +0.3 171,365 - GFF142 0.72 +1.3 171,583 + -0.1 172,160 + GFF143 0.70 -1.2 172,160 + GFF143 0.70 -1.1 172,161 - GFF143 0.70 -0.1 172,798 + GFF144 0.33 +0.7 172,798 + GFF144 0.33 +0.6 172,798 + GFF144 0.33 +0.7 172,799 - GFF144 0.34 +0.9 172,822 + GFF144 0.35 -0.2 172,822 + GFF144 0.35 -0.8 173,037 + GFF144 0.53 +0.5 173,037 + GFF144 0.53 -0.2 173,038 - GFF144 0.53 -0.7 173,038 - GFF144 0.53 -0.3 173,038 - GFF144 0.53 +0.1 173,140 + GFF144 0.61 +1.9 173,262 - GFF144 0.71 -2.1 173,263 + GFF144 0.71 -1.3 173,263 + GFF144 0.71 -1.9 173,264 - GFF144 0.71 +0.4 173,264 - GFF144 0.71 -0.5 173,264 - GFF144 0.71 +0.1 173,264 - GFF144 0.71 +0.2 173,264 - GFF144 0.71 -0.1
Or see this region's nucleotide sequence