Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1421 and GFF1422 are separated by 29 nucleotides GFF1422 and GFF1423 overlap by 8 nucleotides GFF1423 and GFF1424 overlap by 4 nucleotides
GFF1421 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 12,087 to 13,241
GFF1421
GFF1422 - L-lactate dehydrogenase, at 13,271 to 14,431
GFF1422
GFF1423 - Phenylacetate ABC transporter, permease protein 1, at 14,424 to 15,296
GFF1423
GFF1424 - Phenylacetate ABC transporter, permease protein 2, at 15,293 to 16,225
GFF1424
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1 at 12.804 kb on + strand, within GFF1421 at 12.804 kb on + strand, within GFF1421 at 12.804 kb on + strand, within GFF1421 at 12.896 kb on + strand, within GFF1421 at 12.976 kb on - strand, within GFF1421 at 12.987 kb on + strand, within GFF1421 at 13.149 kb on + strand at 13.337 kb on + strand at 13.830 kb on + strand, within GFF1422 at 14.399 kb on + strand at 14.508 kb on + strand at 14.508 kb on + strand at 14.508 kb on + strand at 14.509 kb on - strand at 15.063 kb on + strand, within GFF1423 at 15.189 kb on + strand, within GFF1423 at 15.190 kb on - strand, within GFF1423 at 15.204 kb on + strand, within GFF1423 at 15.292 kb on + strand at 15.292 kb on + strand at 15.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 12,804 + GFF1421 0.62 -0.5 12,804 + GFF1421 0.62 -0.8 12,804 + GFF1421 0.62 -1.0 12,896 + GFF1421 0.70 +0.1 12,976 - GFF1421 0.77 -0.5 12,987 + GFF1421 0.78 +1.2 13,149 + +0.1 13,337 + -0.1 13,830 + GFF1422 0.48 +0.0 14,399 + +0.5 14,508 + +0.5 14,508 + +0.6 14,508 + -0.8 14,509 - -0.4 15,063 + GFF1423 0.73 -0.4 15,189 + GFF1423 0.88 +1.0 15,190 - GFF1423 0.88 -0.4 15,204 + GFF1423 0.89 -0.4 15,292 + -0.4 15,292 + +0.9 15,293 - -1.5
Or see this region's nucleotide sequence