Strain Fitness in Variovorax sp. SCN45 around GFF1403

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1401 and GFF1402 are separated by 99 nucleotidesGFF1402 and GFF1403 are separated by 31 nucleotidesGFF1403 and GFF1404 overlap by 4 nucleotidesGFF1404 and GFF1405 are separated by 102 nucleotides GFF1401 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 750,083 to 751,447 GFF1401 GFF1402 - 3-demethylubiquinone-9 3-methyltransferase, at 751,547 to 752,023 GFF1402 GFF1403 - MATE efflux family protein, at 752,055 to 753,473 GFF1403 GFF1404 - hypothetical protein, at 753,470 to 754,027 GFF1404 GFF1405 - hypothetical protein, at 754,130 to 754,546 GFF1405 Position (kb) 752 753 754Strain fitness (log2 ratio) -2 -1 0 1 2at 751.122 kb on + strand, within GFF1401at 751.122 kb on + strand, within GFF1401at 751.123 kb on - strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.224 kb on + strand, within GFF1401at 751.225 kb on - strand, within GFF1401at 751.225 kb on - strand, within GFF1401at 751.569 kb on + strandat 751.569 kb on + strandat 751.570 kb on - strandat 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.607 kb on + strand, within GFF1402at 751.608 kb on - strand, within GFF1402at 751.748 kb on + strand, within GFF1402at 751.748 kb on + strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.749 kb on - strand, within GFF1402at 751.775 kb on + strand, within GFF1402at 751.775 kb on + strand, within GFF1402at 751.776 kb on - strand, within GFF1402at 751.811 kb on + strand, within GFF1402at 751.811 kb on + strand, within GFF1402at 751.811 kb on + strand, within GFF1402at 752.009 kb on + strandat 752.010 kb on - strandat 752.010 kb on - strandat 752.056 kb on + strandat 752.057 kb on - strandat 752.098 kb on + strandat 752.098 kb on + strandat 752.098 kb on + strandat 752.098 kb on + strandat 752.101 kb on + strandat 752.102 kb on - strandat 752.102 kb on - strandat 752.102 kb on - strandat 752.188 kb on + strandat 752.188 kb on + strandat 752.188 kb on + strandat 752.189 kb on - strandat 752.189 kb on - strandat 752.189 kb on - strandat 752.189 kb on - strandat 752.398 kb on + strand, within GFF1403at 752.399 kb on - strand, within GFF1403at 752.399 kb on - strand, within GFF1403at 752.551 kb on + strand, within GFF1403at 752.551 kb on + strand, within GFF1403at 752.551 kb on + strand, within GFF1403at 752.551 kb on + strand, within GFF1403at 752.552 kb on - strand, within GFF1403at 752.552 kb on - strand, within GFF1403at 752.552 kb on - strand, within GFF1403at 752.552 kb on - strand, within GFF1403at 752.579 kb on - strand, within GFF1403at 752.603 kb on - strand, within GFF1403at 752.603 kb on - strand, within GFF1403at 752.603 kb on - strand, within GFF1403at 753.013 kb on + strand, within GFF1403at 753.186 kb on + strand, within GFF1403at 753.186 kb on + strand, within GFF1403at 753.186 kb on + strand, within GFF1403at 753.187 kb on - strand, within GFF1403at 753.187 kb on - strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.301 kb on + strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.302 kb on - strand, within GFF1403at 753.636 kb on + strand, within GFF1404at 753.636 kb on + strand, within GFF1404at 753.637 kb on - strand, within GFF1404at 753.637 kb on - strand, within GFF1404at 753.910 kb on - strand, within GFF1404at 754.087 kb on + strandat 754.087 kb on + strandat 754.087 kb on + strandat 754.087 kb on + strandat 754.087 kb on + strandat 754.088 kb on - strandat 754.088 kb on - strandat 754.088 kb on - strandat 754.088 kb on - strandat 754.092 kb on + strandat 754.092 kb on + strandat 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.422 kb on + strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405at 754.423 kb on - strand, within GFF1405

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
751,122 + GFF1401 0.76 -0.2
751,122 + GFF1401 0.76 +1.8
751,123 - GFF1401 0.76 +0.4
751,224 + GFF1401 0.84 -0.5
751,224 + GFF1401 0.84 +0.0
751,224 + GFF1401 0.84 +0.5
751,224 + GFF1401 0.84 -0.9
751,224 + GFF1401 0.84 -0.5
751,224 + GFF1401 0.84 +0.1
751,224 + GFF1401 0.84 -0.7
751,225 - GFF1401 0.84 -1.2
751,225 - GFF1401 0.84 +0.1
751,569 + -0.0
751,569 + +1.0
751,570 - -0.0
751,607 + GFF1402 0.13 +0.2
751,607 + GFF1402 0.13 +1.4
751,607 + GFF1402 0.13 -0.1
751,607 + GFF1402 0.13 -0.8
751,607 + GFF1402 0.13 -0.8
751,608 - GFF1402 0.13 -0.2
751,748 + GFF1402 0.42 +0.5
751,748 + GFF1402 0.42 -0.5
751,749 - GFF1402 0.42 -0.4
751,749 - GFF1402 0.42 +0.4
751,749 - GFF1402 0.42 -0.3
751,749 - GFF1402 0.42 -0.5
751,749 - GFF1402 0.42 +0.4
751,775 + GFF1402 0.48 +1.8
751,775 + GFF1402 0.48 +1.4
751,776 - GFF1402 0.48 +0.4
751,811 + GFF1402 0.55 +0.4
751,811 + GFF1402 0.55 +0.3
751,811 + GFF1402 0.55 +0.4
752,009 + +0.1
752,010 - -0.6
752,010 - -0.2
752,056 + -0.0
752,057 - -0.4
752,098 + +0.1
752,098 + +1.4
752,098 + +1.4
752,098 + +0.5
752,101 + +0.1
752,102 - +0.4
752,102 - -0.8
752,102 - -0.2
752,188 + -0.4
752,188 + -0.2
752,188 + -0.2
752,189 - -2.3
752,189 - -1.2
752,189 - -1.8
752,189 - -0.1
752,398 + GFF1403 0.24 +0.9
752,399 - GFF1403 0.24 -1.0
752,399 - GFF1403 0.24 +0.1
752,551 + GFF1403 0.35 +0.3
752,551 + GFF1403 0.35 +0.8
752,551 + GFF1403 0.35 -0.4
752,551 + GFF1403 0.35 +0.7
752,552 - GFF1403 0.35 -0.0
752,552 - GFF1403 0.35 +0.0
752,552 - GFF1403 0.35 +0.0
752,552 - GFF1403 0.35 +0.2
752,579 - GFF1403 0.37 +0.1
752,603 - GFF1403 0.39 +0.6
752,603 - GFF1403 0.39 -0.2
752,603 - GFF1403 0.39 -0.2
753,013 + GFF1403 0.68 -0.5
753,186 + GFF1403 0.80 +0.2
753,186 + GFF1403 0.80 +0.4
753,186 + GFF1403 0.80 -1.2
753,187 - GFF1403 0.80 -0.2
753,187 - GFF1403 0.80 +1.4
753,301 + GFF1403 0.88 +0.5
753,301 + GFF1403 0.88 -0.8
753,301 + GFF1403 0.88 +1.0
753,301 + GFF1403 0.88 -0.2
753,301 + GFF1403 0.88 -0.5
753,301 + GFF1403 0.88 +0.4
753,301 + GFF1403 0.88 -0.5
753,301 + GFF1403 0.88 -0.0
753,301 + GFF1403 0.88 -0.5
753,301 + GFF1403 0.88 +0.0
753,301 + GFF1403 0.88 +0.4
753,301 + GFF1403 0.88 +1.9
753,302 - GFF1403 0.88 -0.8
753,302 - GFF1403 0.88 -0.6
753,302 - GFF1403 0.88 -0.8
753,302 - GFF1403 0.88 -0.5
753,302 - GFF1403 0.88 +0.7
753,302 - GFF1403 0.88 +1.4
753,302 - GFF1403 0.88 -1.3
753,302 - GFF1403 0.88 +0.4
753,302 - GFF1403 0.88 -0.1
753,302 - GFF1403 0.88 -0.1
753,302 - GFF1403 0.88 -0.3
753,302 - GFF1403 0.88 +0.4
753,302 - GFF1403 0.88 +0.1
753,302 - GFF1403 0.88 +1.8
753,302 - GFF1403 0.88 -0.2
753,302 - GFF1403 0.88 -0.2
753,636 + GFF1404 0.30 -0.5
753,636 + GFF1404 0.30 +0.2
753,637 - GFF1404 0.30 +1.5
753,637 - GFF1404 0.30 +0.8
753,910 - GFF1404 0.79 -0.1
754,087 + -0.8
754,087 + -0.2
754,087 + -0.8
754,087 + -0.6
754,087 + +0.7
754,088 - -0.4
754,088 - -0.3
754,088 - +0.7
754,088 - -1.5
754,092 + -0.5
754,092 + -0.2
754,422 + GFF1405 0.70 -0.9
754,422 + GFF1405 0.70 -1.5
754,422 + GFF1405 0.70 +0.2
754,422 + GFF1405 0.70 -0.5
754,422 + GFF1405 0.70 -0.9
754,422 + GFF1405 0.70 +0.2
754,422 + GFF1405 0.70 +0.2
754,422 + GFF1405 0.70 +0.1
754,422 + GFF1405 0.70 -1.8
754,422 + GFF1405 0.70 +0.0
754,422 + GFF1405 0.70 -0.2
754,422 + GFF1405 0.70 +2.4
754,422 + GFF1405 0.70 +1.9
754,422 + GFF1405 0.70 -0.4
754,422 + GFF1405 0.70 -1.5
754,422 + GFF1405 0.70 +0.8
754,422 + GFF1405 0.70 -0.5
754,422 + GFF1405 0.70 -0.2
754,422 + GFF1405 0.70 +0.4
754,422 + GFF1405 0.70 -0.2
754,422 + GFF1405 0.70 -1.2
754,422 + GFF1405 0.70 -0.1
754,423 - GFF1405 0.70 +0.2
754,423 - GFF1405 0.70 -0.8
754,423 - GFF1405 0.70 -1.1
754,423 - GFF1405 0.70 -0.5
754,423 - GFF1405 0.70 +0.7
754,423 - GFF1405 0.70 +1.5
754,423 - GFF1405 0.70 -0.5
754,423 - GFF1405 0.70 -1.0
754,423 - GFF1405 0.70 -0.2
754,423 - GFF1405 0.70 -0.5
754,423 - GFF1405 0.70 +0.4
754,423 - GFF1405 0.70 -2.6
754,423 - GFF1405 0.70 +0.4
754,423 - GFF1405 0.70 -0.0
754,423 - GFF1405 0.70 +0.9
754,423 - GFF1405 0.70 -0.4

Or see this region's nucleotide sequence