Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1393 and GFF1394 are separated by 15 nucleotides GFF1394 and GFF1395 are separated by 3 nucleotides GFF1395 and GFF1396 are separated by 175 nucleotides
GFF1393 - hypothetical protein, at 741,623 to 742,501
GFF1393
GFF1394 - no description, at 742,517 to 743,341
GFF1394
GFF1395 - Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II, at 743,345 to 743,872
GFF1395
GFF1396 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 744,048 to 745,085
GFF1396
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 741.704 kb on + strand at 741.705 kb on - strand at 741.705 kb on - strand at 741.705 kb on - strand at 741.857 kb on + strand, within GFF1393 at 741.857 kb on + strand, within GFF1393 at 741.857 kb on + strand, within GFF1393 at 741.858 kb on - strand, within GFF1393 at 741.858 kb on - strand, within GFF1393 at 741.869 kb on + strand, within GFF1393 at 741.869 kb on + strand, within GFF1393 at 741.870 kb on - strand, within GFF1393 at 741.870 kb on - strand, within GFF1393 at 741.911 kb on + strand, within GFF1393 at 741.911 kb on + strand, within GFF1393 at 741.911 kb on + strand, within GFF1393 at 741.912 kb on - strand, within GFF1393 at 741.958 kb on + strand, within GFF1393 at 741.959 kb on - strand, within GFF1393 at 742.155 kb on + strand, within GFF1393 at 742.156 kb on - strand, within GFF1393 at 742.513 kb on + strand at 742.513 kb on + strand at 742.513 kb on + strand at 742.514 kb on - strand at 742.523 kb on + strand at 742.523 kb on + strand at 742.523 kb on + strand at 742.524 kb on - strand at 742.524 kb on - strand at 742.536 kb on - strand at 742.630 kb on + strand, within GFF1394 at 742.637 kb on - strand, within GFF1394 at 742.637 kb on - strand, within GFF1394 at 742.699 kb on + strand, within GFF1394 at 742.700 kb on - strand, within GFF1394 at 742.973 kb on + strand, within GFF1394 at 742.974 kb on - strand, within GFF1394 at 742.974 kb on - strand, within GFF1394 at 743.076 kb on + strand, within GFF1394 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.577 kb on + strand, within GFF1395 at 743.577 kb on + strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.784 kb on + strand, within GFF1395 at 743.784 kb on + strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.800 kb on - strand, within GFF1395 at 743.830 kb on - strand at 743.830 kb on - strand at 743.891 kb on + strand at 743.925 kb on + strand at 743.925 kb on + strand at 743.925 kb on + strand at 743.934 kb on + strand at 743.935 kb on - strand at 744.133 kb on - strand at 744.274 kb on - strand, within GFF1396 at 744.274 kb on - strand, within GFF1396
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 741,704 + -0.6 741,705 - +0.1 741,705 - +0.2 741,705 - -0.2 741,857 + GFF1393 0.27 -0.2 741,857 + GFF1393 0.27 -1.9 741,857 + GFF1393 0.27 -1.0 741,858 - GFF1393 0.27 -2.1 741,858 - GFF1393 0.27 +0.4 741,869 + GFF1393 0.28 +0.9 741,869 + GFF1393 0.28 -0.4 741,870 - GFF1393 0.28 +0.2 741,870 - GFF1393 0.28 -0.1 741,911 + GFF1393 0.33 +0.4 741,911 + GFF1393 0.33 -0.2 741,911 + GFF1393 0.33 -0.3 741,912 - GFF1393 0.33 -0.6 741,958 + GFF1393 0.38 -2.3 741,959 - GFF1393 0.38 +0.0 742,155 + GFF1393 0.61 -1.2 742,156 - GFF1393 0.61 -0.3 742,513 + -0.2 742,513 + +0.6 742,513 + -0.1 742,514 - -0.5 742,523 + -0.2 742,523 + -0.0 742,523 + -0.5 742,524 - -0.7 742,524 - +0.2 742,536 - -1.0 742,630 + GFF1394 0.14 -0.3 742,637 - GFF1394 0.15 +0.3 742,637 - GFF1394 0.15 -0.3 742,699 + GFF1394 0.22 -1.0 742,700 - GFF1394 0.22 -0.6 742,973 + GFF1394 0.55 -0.4 742,974 - GFF1394 0.55 -0.7 742,974 - GFF1394 0.55 -1.3 743,076 + GFF1394 0.68 -0.8 743,457 + GFF1395 0.21 -0.6 743,457 + GFF1395 0.21 +0.4 743,457 + GFF1395 0.21 -0.4 743,457 + GFF1395 0.21 -0.5 743,458 - GFF1395 0.21 +0.6 743,458 - GFF1395 0.21 +0.1 743,458 - GFF1395 0.21 -0.4 743,458 - GFF1395 0.21 -0.0 743,458 - GFF1395 0.21 +0.3 743,577 + GFF1395 0.44 -0.1 743,577 + GFF1395 0.44 -0.0 743,578 - GFF1395 0.44 +0.2 743,578 - GFF1395 0.44 -0.5 743,578 - GFF1395 0.44 +0.2 743,578 - GFF1395 0.44 +0.1 743,578 - GFF1395 0.44 -0.0 743,784 + GFF1395 0.83 -0.3 743,784 + GFF1395 0.83 +0.5 743,785 - GFF1395 0.83 -0.2 743,785 - GFF1395 0.83 -0.9 743,785 - GFF1395 0.83 -0.1 743,785 - GFF1395 0.83 -0.3 743,785 - GFF1395 0.83 +0.6 743,785 - GFF1395 0.83 -0.1 743,800 - GFF1395 0.86 -0.2 743,830 - -0.1 743,830 - -0.4 743,891 + +1.7 743,925 + -0.4 743,925 + -1.1 743,925 + -0.4 743,934 + -3.0 743,935 - -0.6 744,133 - -0.4 744,274 - GFF1396 0.22 -0.0 744,274 - GFF1396 0.22 +0.4
Or see this region's nucleotide sequence