Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1372 and GFF1373 are separated by 2 nucleotides GFF1373 and GFF1374 are separated by 9 nucleotides GFF1374 and GFF1375 are separated by 75 nucleotides
GFF1372 - Uncharacterized MFS-type transporter, at 718,523 to 719,773
GFF1372
GFF1373 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 719,776 to 720,312
GFF1373
GFF1374 - hypothetical protein, at 720,322 to 721,572
GFF1374
GFF1375 - Transcriptional regulator, LysR family, at 721,648 to 722,565
GFF1375
Position (kb) 720
721
722 Strain fitness (log2 ratio) -1
0
1 at 719.348 kb on + strand, within GFF1372 at 719.348 kb on + strand, within GFF1372 at 719.348 kb on + strand, within GFF1372 at 719.348 kb on + strand, within GFF1372 at 720.052 kb on + strand, within GFF1373 at 720.052 kb on + strand, within GFF1373 at 720.052 kb on + strand, within GFF1373 at 720.052 kb on + strand, within GFF1373 at 720.053 kb on - strand, within GFF1373 at 720.094 kb on + strand, within GFF1373 at 720.094 kb on + strand, within GFF1373 at 720.311 kb on - strand at 720.514 kb on + strand, within GFF1374 at 720.767 kb on + strand, within GFF1374 at 720.833 kb on + strand, within GFF1374 at 720.833 kb on + strand, within GFF1374 at 720.833 kb on + strand, within GFF1374 at 720.833 kb on + strand, within GFF1374 at 720.833 kb on + strand, within GFF1374 at 720.834 kb on - strand, within GFF1374 at 720.834 kb on - strand, within GFF1374 at 720.834 kb on - strand, within GFF1374 at 720.868 kb on + strand, within GFF1374 at 720.889 kb on - strand, within GFF1374 at 721.701 kb on - strand at 721.701 kb on - strand at 721.701 kb on - strand at 721.736 kb on + strand at 721.736 kb on + strand at 721.736 kb on + strand at 721.736 kb on + strand at 721.736 kb on + strand at 721.736 kb on + strand at 721.737 kb on - strand at 721.737 kb on - strand at 721.737 kb on - strand at 721.739 kb on + strand at 721.739 kb on + strand at 721.739 kb on + strand at 721.739 kb on + strand at 721.740 kb on - strand, within GFF1375 at 721.740 kb on - strand, within GFF1375 at 721.740 kb on - strand, within GFF1375 at 721.742 kb on + strand, within GFF1375 at 721.742 kb on + strand, within GFF1375 at 721.743 kb on - strand, within GFF1375 at 721.743 kb on - strand, within GFF1375 at 721.743 kb on - strand, within GFF1375
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 719,348 + GFF1372 0.66 -0.4 719,348 + GFF1372 0.66 +1.4 719,348 + GFF1372 0.66 +0.3 719,348 + GFF1372 0.66 -0.1 720,052 + GFF1373 0.51 +0.6 720,052 + GFF1373 0.51 +0.0 720,052 + GFF1373 0.51 -0.2 720,052 + GFF1373 0.51 -0.1 720,053 - GFF1373 0.52 -1.0 720,094 + GFF1373 0.59 -0.6 720,094 + GFF1373 0.59 +0.9 720,311 - +0.0 720,514 + GFF1374 0.15 +0.2 720,767 + GFF1374 0.36 +0.5 720,833 + GFF1374 0.41 +0.9 720,833 + GFF1374 0.41 +0.1 720,833 + GFF1374 0.41 -0.2 720,833 + GFF1374 0.41 +0.8 720,833 + GFF1374 0.41 +0.8 720,834 - GFF1374 0.41 -0.1 720,834 - GFF1374 0.41 +0.9 720,834 - GFF1374 0.41 +0.1 720,868 + GFF1374 0.44 -0.2 720,889 - GFF1374 0.45 -0.2 721,701 - +0.9 721,701 - -0.2 721,701 - -0.5 721,736 + -0.4 721,736 + +0.4 721,736 + +1.0 721,736 + -0.7 721,736 + -1.1 721,736 + -1.2 721,737 - +0.3 721,737 - -0.4 721,737 - -0.2 721,739 + -0.7 721,739 + -0.4 721,739 + +0.3 721,739 + +0.8 721,740 - GFF1375 0.10 +0.2 721,740 - GFF1375 0.10 +0.8 721,740 - GFF1375 0.10 -0.2 721,742 + GFF1375 0.10 +0.4 721,742 + GFF1375 0.10 -0.2 721,743 - GFF1375 0.10 +0.7 721,743 - GFF1375 0.10 -0.6 721,743 - GFF1375 0.10 -0.2
Or see this region's nucleotide sequence