Strain Fitness in Variovorax sp. SCN45 around GFF1373

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1372 and GFF1373 are separated by 2 nucleotidesGFF1373 and GFF1374 are separated by 9 nucleotides GFF1372 - Uncharacterized MFS-type transporter, at 718,523 to 719,773 GFF1372 GFF1373 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 719,776 to 720,312 GFF1373 GFF1374 - hypothetical protein, at 720,322 to 721,572 GFF1374 Position (kb) 719 720 721Strain fitness (log2 ratio) -2 -1 0 1at 718.991 kb on + strand, within GFF1372at 718.991 kb on + strand, within GFF1372at 718.991 kb on + strand, within GFF1372at 718.992 kb on - strand, within GFF1372at 718.992 kb on - strand, within GFF1372at 718.992 kb on - strand, within GFF1372at 718.992 kb on - strand, within GFF1372at 718.992 kb on - strand, within GFF1372at 719.200 kb on + strand, within GFF1372at 719.200 kb on + strand, within GFF1372at 719.200 kb on + strand, within GFF1372at 719.200 kb on + strand, within GFF1372at 719.253 kb on - strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.273 kb on + strand, within GFF1372at 719.274 kb on - strand, within GFF1372at 719.282 kb on + strand, within GFF1372at 719.282 kb on + strand, within GFF1372at 719.282 kb on + strand, within GFF1372at 719.283 kb on - strand, within GFF1372at 719.283 kb on - strand, within GFF1372at 719.283 kb on - strand, within GFF1372at 719.283 kb on - strand, within GFF1372at 719.348 kb on + strand, within GFF1372at 719.348 kb on + strand, within GFF1372at 719.348 kb on + strand, within GFF1372at 719.348 kb on + strand, within GFF1372at 720.052 kb on + strand, within GFF1373at 720.052 kb on + strand, within GFF1373at 720.052 kb on + strand, within GFF1373at 720.052 kb on + strand, within GFF1373at 720.053 kb on - strand, within GFF1373at 720.094 kb on + strand, within GFF1373at 720.094 kb on + strand, within GFF1373at 720.311 kb on - strandat 720.514 kb on + strand, within GFF1374at 720.767 kb on + strand, within GFF1374at 720.833 kb on + strand, within GFF1374at 720.833 kb on + strand, within GFF1374at 720.833 kb on + strand, within GFF1374at 720.833 kb on + strand, within GFF1374at 720.833 kb on + strand, within GFF1374at 720.834 kb on - strand, within GFF1374at 720.834 kb on - strand, within GFF1374at 720.834 kb on - strand, within GFF1374at 720.868 kb on + strand, within GFF1374at 720.889 kb on - strand, within GFF1374

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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718,991 + GFF1372 0.37 +0.0
718,991 + GFF1372 0.37 -0.1
718,991 + GFF1372 0.37 +0.6
718,992 - GFF1372 0.37 +0.2
718,992 - GFF1372 0.37 +1.0
718,992 - GFF1372 0.37 +0.6
718,992 - GFF1372 0.37 -0.6
718,992 - GFF1372 0.37 -0.1
719,200 + GFF1372 0.54 -0.3
719,200 + GFF1372 0.54 +0.4
719,200 + GFF1372 0.54 +0.4
719,200 + GFF1372 0.54 -1.6
719,253 - GFF1372 0.58 -1.9
719,273 + GFF1372 0.60 -0.6
719,273 + GFF1372 0.60 +1.1
719,273 + GFF1372 0.60 -0.8
719,273 + GFF1372 0.60 -0.3
719,273 + GFF1372 0.60 +0.6
719,273 + GFF1372 0.60 -0.3
719,274 - GFF1372 0.60 +0.4
719,282 + GFF1372 0.61 +0.0
719,282 + GFF1372 0.61 -0.8
719,282 + GFF1372 0.61 +1.4
719,283 - GFF1372 0.61 -0.5
719,283 - GFF1372 0.61 -0.2
719,283 - GFF1372 0.61 -0.3
719,283 - GFF1372 0.61 +0.1
719,348 + GFF1372 0.66 -0.4
719,348 + GFF1372 0.66 +1.4
719,348 + GFF1372 0.66 +0.3
719,348 + GFF1372 0.66 -0.1
720,052 + GFF1373 0.51 +0.6
720,052 + GFF1373 0.51 +0.0
720,052 + GFF1373 0.51 -0.2
720,052 + GFF1373 0.51 -0.1
720,053 - GFF1373 0.52 -1.0
720,094 + GFF1373 0.59 -0.6
720,094 + GFF1373 0.59 +0.9
720,311 - +0.0
720,514 + GFF1374 0.15 +0.2
720,767 + GFF1374 0.36 +0.5
720,833 + GFF1374 0.41 +0.9
720,833 + GFF1374 0.41 +0.1
720,833 + GFF1374 0.41 -0.2
720,833 + GFF1374 0.41 +0.8
720,833 + GFF1374 0.41 +0.8
720,834 - GFF1374 0.41 -0.1
720,834 - GFF1374 0.41 +0.9
720,834 - GFF1374 0.41 +0.1
720,868 + GFF1374 0.44 -0.2
720,889 - GFF1374 0.45 -0.2

Or see this region's nucleotide sequence