Strain Fitness in Variovorax sp. SCN45 around GFF1367

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1366 and GFF1367 are separated by 94 nucleotidesGFF1367 and GFF1368 are separated by 870 nucleotides GFF1366 - Uncharacterized MFS-type transporter, at 709,152 to 710,342 GFF1366 GFF1367 - Transcriptional regulator, LysR family, at 710,437 to 711,399 GFF1367 GFF1368 - BUG/TctC family periplasmic protein, at 712,270 to 713,247 GFF1368 Position (kb) 710 711 712Strain fitness (log2 ratio) -1 0 1 2at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 710.071 kb on + strand, within GFF1366at 710.071 kb on + strand, within GFF1366at 710.352 kb on + strandat 710.353 kb on - strandat 710.394 kb on + strandat 710.647 kb on + strand, within GFF1367at 710.648 kb on - strand, within GFF1367at 710.648 kb on - strand, within GFF1367at 710.959 kb on + strand, within GFF1367at 710.960 kb on - strand, within GFF1367at 711.029 kb on - strand, within GFF1367at 711.172 kb on + strand, within GFF1367at 711.172 kb on + strand, within GFF1367at 711.172 kb on + strand, within GFF1367at 711.172 kb on + strand, within GFF1367at 711.172 kb on + strand, within GFF1367at 711.173 kb on - strand, within GFF1367at 711.173 kb on - strand, within GFF1367at 711.173 kb on - strand, within GFF1367at 711.173 kb on - strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.179 kb on + strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.180 kb on - strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.262 kb on + strand, within GFF1367at 711.263 kb on - strand, within GFF1367at 711.263 kb on - strand, within GFF1367at 711.263 kb on - strand, within GFF1367at 711.263 kb on - strand, within GFF1367at 711.263 kb on - strand, within GFF1367at 711.349 kb on + strandat 711.350 kb on - strandat 711.393 kb on + strandat 711.393 kb on + strandat 711.393 kb on + strandat 711.394 kb on - strandat 711.394 kb on - strandat 711.440 kb on + strandat 711.440 kb on + strandat 711.610 kb on + strandat 711.610 kb on + strandat 711.610 kb on + strandat 711.610 kb on + strandat 711.611 kb on - strandat 711.611 kb on - strandat 711.645 kb on + strandat 711.646 kb on - strandat 712.006 kb on + strandat 712.006 kb on + strandat 712.006 kb on + strandat 712.007 kb on - strandat 712.007 kb on - strandat 712.007 kb on - strandat 712.095 kb on - strandat 712.382 kb on + strand, within GFF1368at 712.382 kb on + strand, within GFF1368at 712.382 kb on + strand, within GFF1368

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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709,678 + GFF1366 0.44 +0.1
709,678 + GFF1366 0.44 -0.5
709,678 + GFF1366 0.44 +0.0
709,678 + GFF1366 0.44 +0.1
709,678 + GFF1366 0.44 +0.1
709,678 + GFF1366 0.44 +0.6
709,678 + GFF1366 0.44 +2.1
709,678 + GFF1366 0.44 +0.3
709,679 - GFF1366 0.44 -0.5
709,679 - GFF1366 0.44 -1.1
709,679 - GFF1366 0.44 -0.6
709,679 - GFF1366 0.44 +0.0
709,679 - GFF1366 0.44 +0.2
710,071 + GFF1366 0.77 +0.1
710,071 + GFF1366 0.77 -0.2
710,352 + -0.8
710,353 - -0.4
710,394 + +0.4
710,647 + GFF1367 0.22 +0.1
710,648 - GFF1367 0.22 -0.1
710,648 - GFF1367 0.22 -0.2
710,959 + GFF1367 0.54 +0.4
710,960 - GFF1367 0.54 +1.0
711,029 - GFF1367 0.61 -1.0
711,172 + GFF1367 0.76 +1.0
711,172 + GFF1367 0.76 +2.0
711,172 + GFF1367 0.76 -0.2
711,172 + GFF1367 0.76 -0.8
711,172 + GFF1367 0.76 -0.6
711,173 - GFF1367 0.76 +0.9
711,173 - GFF1367 0.76 +0.0
711,173 - GFF1367 0.76 -0.6
711,173 - GFF1367 0.76 -0.2
711,179 + GFF1367 0.77 -0.1
711,179 + GFF1367 0.77 +0.3
711,179 + GFF1367 0.77 +1.4
711,179 + GFF1367 0.77 -0.8
711,179 + GFF1367 0.77 -0.6
711,179 + GFF1367 0.77 -0.3
711,179 + GFF1367 0.77 +1.2
711,179 + GFF1367 0.77 -0.3
711,180 - GFF1367 0.77 -0.0
711,180 - GFF1367 0.77 +0.1
711,180 - GFF1367 0.77 +0.1
711,180 - GFF1367 0.77 +0.1
711,180 - GFF1367 0.77 +0.1
711,180 - GFF1367 0.77 +0.2
711,180 - GFF1367 0.77 -1.0
711,180 - GFF1367 0.77 +0.9
711,180 - GFF1367 0.77 +0.4
711,180 - GFF1367 0.77 +0.1
711,262 + GFF1367 0.86 -1.3
711,262 + GFF1367 0.86 +0.1
711,262 + GFF1367 0.86 -0.6
711,262 + GFF1367 0.86 -1.1
711,262 + GFF1367 0.86 +0.3
711,262 + GFF1367 0.86 +0.2
711,262 + GFF1367 0.86 +0.5
711,263 - GFF1367 0.86 +0.0
711,263 - GFF1367 0.86 -0.4
711,263 - GFF1367 0.86 +0.2
711,263 - GFF1367 0.86 -0.2
711,263 - GFF1367 0.86 +0.2
711,349 + -0.6
711,350 - +0.2
711,393 + -1.2
711,393 + +0.4
711,393 + -0.8
711,394 - -0.1
711,394 - -0.5
711,440 + -0.5
711,440 + -0.5
711,610 + +0.6
711,610 + -0.8
711,610 + -1.1
711,610 + -0.9
711,611 - +0.3
711,611 - -1.5
711,645 + -0.6
711,646 - -1.0
712,006 + -0.6
712,006 + +1.8
712,006 + +1.4
712,007 - -1.1
712,007 - +0.0
712,007 - -0.9
712,095 - -1.1
712,382 + GFF1368 0.11 +0.6
712,382 + GFF1368 0.11 -0.1
712,382 + GFF1368 0.11 -0.9

Or see this region's nucleotide sequence