Strain Fitness in Variovorax sp. SCN45 around GFF1360

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1358 and GFF1359 are separated by 104 nucleotidesGFF1359 and GFF1360 are separated by 14 nucleotidesGFF1360 and GFF1361 are separated by 14 nucleotidesGFF1361 and GFF1362 are separated by 94 nucleotidesGFF1362 and GFF1363 are separated by 125 nucleotides GFF1358 - Transcriptional regulator, LysR family, at 700,562 to 701,557 GFF1358 GFF1359 - FMN-dependent NADH-azoreductase (EC 1.7.1.6), at 701,662 to 702,348 GFF1359 GFF1360 - 3-demethylubiquinol 3-O-methyltransferase (EC 2.1.1.64) @ 2-polyprenyl-6-hydroxyphenyl methylase (EC 2.1.1.222), at 702,363 to 703,067 GFF1360 GFF1361 - no description, at 703,082 to 703,465 GFF1361 GFF1362 - no description, at 703,560 to 703,886 GFF1362 GFF1363 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 704,012 to 706,783 GFF1363 Position (kb) 702 703 704Strain fitness (log2 ratio) -2 -1 0 1 2at 701.600 kb on - strandat 701.643 kb on + strandat 701.643 kb on + strandat 701.643 kb on + strandat 701.643 kb on + strandat 701.643 kb on + strandat 701.643 kb on + strandat 701.644 kb on - strandat 701.644 kb on - strandat 701.682 kb on + strandat 701.683 kb on - strandat 701.683 kb on - strandat 701.803 kb on + strand, within GFF1359at 701.804 kb on - strand, within GFF1359at 701.804 kb on - strand, within GFF1359at 701.974 kb on + strand, within GFF1359at 701.974 kb on + strand, within GFF1359at 701.975 kb on - strand, within GFF1359at 701.975 kb on - strand, within GFF1359at 701.975 kb on - strand, within GFF1359at 701.975 kb on - strand, within GFF1359at 701.975 kb on - strand, within GFF1359at 702.116 kb on + strand, within GFF1359at 702.116 kb on + strand, within GFF1359at 702.117 kb on - strand, within GFF1359at 702.117 kb on - strand, within GFF1359at 702.117 kb on - strand, within GFF1359at 702.139 kb on + strand, within GFF1359at 702.140 kb on - strand, within GFF1359at 702.205 kb on + strand, within GFF1359at 702.205 kb on + strand, within GFF1359at 702.205 kb on + strand, within GFF1359at 702.205 kb on + strand, within GFF1359at 702.205 kb on + strand, within GFF1359at 702.391 kb on + strandat 702.392 kb on - strandat 702.442 kb on + strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.443 kb on - strand, within GFF1360at 702.526 kb on + strand, within GFF1360at 702.526 kb on + strand, within GFF1360at 702.526 kb on + strand, within GFF1360at 702.526 kb on + strand, within GFF1360at 703.137 kb on + strand, within GFF1361at 703.137 kb on + strand, within GFF1361at 703.137 kb on + strand, within GFF1361at 703.388 kb on + strand, within GFF1361at 703.389 kb on - strand, within GFF1361at 703.389 kb on - strand, within GFF1361at 703.423 kb on - strand, within GFF1361at 703.423 kb on - strand, within GFF1361at 703.423 kb on - strand, within GFF1361at 703.426 kb on - strand, within GFF1361at 703.426 kb on - strand, within GFF1361at 703.518 kb on - strandat 703.521 kb on + strandat 703.614 kb on + strand, within GFF1362at 703.614 kb on + strand, within GFF1362at 703.614 kb on + strand, within GFF1362at 703.614 kb on + strand, within GFF1362at 703.614 kb on + strand, within GFF1362at 703.614 kb on + strand, within GFF1362at 703.615 kb on - strand, within GFF1362at 703.615 kb on - strand, within GFF1362at 703.615 kb on - strand, within GFF1362at 703.752 kb on + strand, within GFF1362at 703.931 kb on + strandat 703.956 kb on + strandat 704.010 kb on + strandat 704.011 kb on - strandat 704.011 kb on - strandat 704.011 kb on - strandat 704.053 kb on + strandat 704.053 kb on + strandat 704.053 kb on + strandat 704.054 kb on - strandat 704.054 kb on - strandat 704.054 kb on - strandat 704.054 kb on - strandat 704.054 kb on - strandat 704.054 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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701,600 - +1.2
701,643 + -0.7
701,643 + -0.6
701,643 + +0.4
701,643 + -1.3
701,643 + -0.1
701,643 + -1.1
701,644 - +1.1
701,644 - -0.3
701,682 + -0.4
701,683 - -0.6
701,683 - +0.8
701,803 + GFF1359 0.21 +2.5
701,804 - GFF1359 0.21 +0.8
701,804 - GFF1359 0.21 +0.5
701,974 + GFF1359 0.45 -1.1
701,974 + GFF1359 0.45 -0.8
701,975 - GFF1359 0.46 +0.7
701,975 - GFF1359 0.46 +0.0
701,975 - GFF1359 0.46 +1.4
701,975 - GFF1359 0.46 -0.6
701,975 - GFF1359 0.46 +2.7
702,116 + GFF1359 0.66 -0.0
702,116 + GFF1359 0.66 +0.3
702,117 - GFF1359 0.66 -0.6
702,117 - GFF1359 0.66 +0.1
702,117 - GFF1359 0.66 +0.5
702,139 + GFF1359 0.69 -0.3
702,140 - GFF1359 0.70 -0.8
702,205 + GFF1359 0.79 -0.0
702,205 + GFF1359 0.79 +0.1
702,205 + GFF1359 0.79 -0.5
702,205 + GFF1359 0.79 -1.0
702,205 + GFF1359 0.79 +0.9
702,391 + -1.4
702,392 - -0.6
702,442 + GFF1360 0.11 -0.3
702,443 - GFF1360 0.11 -1.2
702,443 - GFF1360 0.11 +0.9
702,443 - GFF1360 0.11 -0.0
702,443 - GFF1360 0.11 -0.8
702,443 - GFF1360 0.11 +0.0
702,443 - GFF1360 0.11 -0.1
702,443 - GFF1360 0.11 -0.0
702,526 + GFF1360 0.23 +0.1
702,526 + GFF1360 0.23 +0.5
702,526 + GFF1360 0.23 -0.6
702,526 + GFF1360 0.23 +0.0
703,137 + GFF1361 0.14 -1.0
703,137 + GFF1361 0.14 -0.1
703,137 + GFF1361 0.14 -1.0
703,388 + GFF1361 0.80 +0.3
703,389 - GFF1361 0.80 +0.1
703,389 - GFF1361 0.80 -1.6
703,423 - GFF1361 0.89 -1.6
703,423 - GFF1361 0.89 +0.6
703,423 - GFF1361 0.89 -0.9
703,426 - GFF1361 0.90 -0.2
703,426 - GFF1361 0.90 -1.6
703,518 - -0.2
703,521 + +0.1
703,614 + GFF1362 0.17 -1.8
703,614 + GFF1362 0.17 -0.3
703,614 + GFF1362 0.17 +1.9
703,614 + GFF1362 0.17 -1.0
703,614 + GFF1362 0.17 -0.4
703,614 + GFF1362 0.17 -0.3
703,615 - GFF1362 0.17 +0.9
703,615 - GFF1362 0.17 -1.2
703,615 - GFF1362 0.17 -0.5
703,752 + GFF1362 0.59 -0.1
703,931 + +0.6
703,956 + -0.2
704,010 + -1.0
704,011 - +0.8
704,011 - -0.6
704,011 - -0.6
704,053 + -0.3
704,053 + -0.3
704,053 + -0.0
704,054 - -0.5
704,054 - -1.1
704,054 - -0.5
704,054 - +0.5
704,054 - +1.5
704,054 - +0.7

Or see this region's nucleotide sequence