Strain Fitness in Variovorax sp. SCN45 around GFF1327

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1325 and GFF1326 are separated by 63 nucleotidesGFF1326 and GFF1327 are separated by 139 nucleotidesGFF1327 and GFF1328 overlap by 4 nucleotidesGFF1328 and GFF1329 are separated by 10 nucleotidesGFF1329 and GFF1330 overlap by 4 nucleotides GFF1325 - no description, at 666,195 to 666,506 GFF1325 GFF1326 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8), at 666,570 to 667,355 GFF1326 GFF1327 - Cell division protein BolA, at 667,495 to 667,788 GFF1327 GFF1328 - Intracellular septation protein IspA, at 667,785 to 668,327 GFF1328 GFF1329 - Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12), at 668,338 to 668,754 GFF1329 GFF1330 - UPF0061 protein YdiU, at 668,751 to 670,232 GFF1330 Position (kb) 667 668Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 666.572 kb on - strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.991 kb on + strand, within GFF1326at 666.992 kb on - strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.096 kb on + strand, within GFF1326at 667.096 kb on + strand, within GFF1326at 667.096 kb on + strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.364 kb on + strandat 667.365 kb on - strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.392 kb on - strandat 667.392 kb on - strandat 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.767 kb on + strandat 667.768 kb on - strandat 667.773 kb on + strandat 667.774 kb on - strandat 667.774 kb on - strandat 667.812 kb on - strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 668.384 kb on + strand, within GFF1329at 668.384 kb on + strand, within GFF1329at 668.384 kb on + strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.385 kb on - strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.603 kb on + strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.604 kb on - strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.630 kb on + strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.631 kb on - strand, within GFF1329at 668.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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666,572 - +0.3
666,607 + -0.3
666,607 + -0.7
666,607 + +0.2
666,607 + -1.5
666,607 + -0.1
666,607 + -0.9
666,955 + GFF1326 0.49 +0.4
666,955 + GFF1326 0.49 -2.3
666,955 + GFF1326 0.49 +0.5
666,955 + GFF1326 0.49 -1.3
666,955 + GFF1326 0.49 +0.7
666,955 + GFF1326 0.49 -0.6
666,955 + GFF1326 0.49 +2.4
666,955 + GFF1326 0.49 +0.7
666,955 + GFF1326 0.49 -1.0
666,955 + GFF1326 0.49 +0.2
666,956 - GFF1326 0.49 +0.6
666,956 - GFF1326 0.49 +0.1
666,956 - GFF1326 0.49 -0.5
666,956 - GFF1326 0.49 -0.2
666,956 - GFF1326 0.49 -0.7
666,956 - GFF1326 0.49 +0.2
666,956 - GFF1326 0.49 -0.5
666,956 - GFF1326 0.49 -0.3
666,991 + GFF1326 0.54 -0.5
666,992 - GFF1326 0.54 +1.4
667,036 + GFF1326 0.59 -0.5
667,036 + GFF1326 0.59 -0.3
667,036 + GFF1326 0.59 -0.7
667,036 + GFF1326 0.59 +0.1
667,036 + GFF1326 0.59 -0.2
667,037 - GFF1326 0.59 +1.1
667,037 - GFF1326 0.59 -0.6
667,037 - GFF1326 0.59 -0.2
667,037 - GFF1326 0.59 -0.6
667,037 - GFF1326 0.59 -0.2
667,037 - GFF1326 0.59 -0.9
667,037 - GFF1326 0.59 -2.8
667,037 - GFF1326 0.59 -0.2
667,037 - GFF1326 0.59 -0.9
667,037 - GFF1326 0.59 -0.4
667,096 + GFF1326 0.67 +0.5
667,096 + GFF1326 0.67 +1.0
667,096 + GFF1326 0.67 -0.6
667,097 - GFF1326 0.67 -0.6
667,097 - GFF1326 0.67 +0.9
667,097 - GFF1326 0.67 +0.2
667,097 - GFF1326 0.67 -0.9
667,364 + -0.3
667,365 - -0.2
667,391 + -1.8
667,391 + +1.4
667,391 + +0.4
667,391 + -0.7
667,391 + +0.0
667,392 - -0.0
667,392 - +0.8
667,556 + GFF1327 0.21 +1.0
667,556 + GFF1327 0.21 -0.6
667,556 + GFF1327 0.21 -0.0
667,556 + GFF1327 0.21 +0.7
667,556 + GFF1327 0.21 +0.5
667,556 + GFF1327 0.21 +0.8
667,556 + GFF1327 0.21 -0.3
667,556 + GFF1327 0.21 -1.6
667,556 + GFF1327 0.21 -0.4
667,556 + GFF1327 0.21 -0.5
667,556 + GFF1327 0.21 -1.2
667,556 + GFF1327 0.21 +1.6
667,556 + GFF1327 0.21 -1.6
667,556 + GFF1327 0.21 -0.1
667,556 + GFF1327 0.21 -1.0
667,556 + GFF1327 0.21 -0.5
667,556 + GFF1327 0.21 +1.0
667,556 + GFF1327 0.21 -0.6
667,557 - GFF1327 0.21 -0.5
667,557 - GFF1327 0.21 +0.0
667,557 - GFF1327 0.21 +0.2
667,557 - GFF1327 0.21 +0.2
667,557 - GFF1327 0.21 +0.0
667,557 - GFF1327 0.21 +0.3
667,557 - GFF1327 0.21 +0.2
667,557 - GFF1327 0.21 -0.2
667,557 - GFF1327 0.21 +1.4
667,557 - GFF1327 0.21 -0.6
667,557 - GFF1327 0.21 +0.6
667,557 - GFF1327 0.21 -1.4
667,557 - GFF1327 0.21 +0.2
667,557 - GFF1327 0.21 -0.1
667,557 - GFF1327 0.21 +0.4
667,767 + -1.5
667,768 - -0.2
667,773 + -0.2
667,774 - -1.8
667,774 - -0.1
667,812 - -0.6
667,828 + +0.9
667,828 + +0.5
667,828 + +0.1
667,828 + -0.3
667,828 + -0.2
667,828 + -2.2
667,828 + -0.2
667,828 + -0.8
667,829 - -1.5
667,829 - -1.0
667,829 - -0.5
667,829 - +0.4
667,829 - -0.2
667,829 - -0.3
667,829 - -1.2
667,829 - +0.6
667,829 - -0.5
667,829 - -1.2
667,829 - -0.3
667,829 - -0.2
668,384 + GFF1329 0.11 +0.4
668,384 + GFF1329 0.11 +1.4
668,384 + GFF1329 0.11 -1.2
668,385 - GFF1329 0.11 -1.5
668,385 - GFF1329 0.11 -0.4
668,385 - GFF1329 0.11 +0.8
668,385 - GFF1329 0.11 -1.0
668,385 - GFF1329 0.11 -1.1
668,385 - GFF1329 0.11 +0.2
668,603 + GFF1329 0.64 -0.7
668,603 + GFF1329 0.64 -0.5
668,603 + GFF1329 0.64 -0.6
668,603 + GFF1329 0.64 -0.2
668,603 + GFF1329 0.64 +0.8
668,603 + GFF1329 0.64 -0.5
668,604 - GFF1329 0.64 +0.7
668,604 - GFF1329 0.64 -0.5
668,604 - GFF1329 0.64 +0.0
668,604 - GFF1329 0.64 +0.8
668,604 - GFF1329 0.64 -0.6
668,604 - GFF1329 0.64 -0.1
668,604 - GFF1329 0.64 -0.8
668,604 - GFF1329 0.64 -0.8
668,604 - GFF1329 0.64 -1.0
668,630 + GFF1329 0.70 -0.5
668,630 + GFF1329 0.70 +0.3
668,630 + GFF1329 0.70 -0.2
668,630 + GFF1329 0.70 -0.2
668,630 + GFF1329 0.70 -0.9
668,631 - GFF1329 0.70 +0.0
668,631 - GFF1329 0.70 +0.5
668,631 - GFF1329 0.70 +0.3
668,740 + +0.8

Or see this region's nucleotide sequence