Strain Fitness in Variovorax sp. SCN45 around GFF1317

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1316 and GFF1317 overlap by 4 nucleotidesGFF1317 and GFF1318 are separated by 2 nucleotidesGFF1318 and GFF1319 overlap by 4 nucleotides GFF1316 - Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12), at 651,266 to 653,428 GFF1316 GFF1317 - no description, at 653,425 to 654,222 GFF1317 GFF1318 - hypothetical protein, at 654,225 to 654,722 GFF1318 GFF1319 - no description, at 654,719 to 655,192 GFF1319 Position (kb) 653 654 655Strain fitness (log2 ratio) -2 -1 0 1 2at 652.563 kb on + strand, within GFF1316at 652.563 kb on + strand, within GFF1316at 652.563 kb on + strand, within GFF1316at 652.563 kb on + strand, within GFF1316at 652.563 kb on + strand, within GFF1316at 652.563 kb on + strand, within GFF1316at 652.563 kb on + strand, within GFF1316at 652.564 kb on - strand, within GFF1316at 652.564 kb on - strand, within GFF1316at 652.564 kb on - strand, within GFF1316at 652.564 kb on - strand, within GFF1316at 652.564 kb on - strand, within GFF1316at 652.564 kb on - strand, within GFF1316at 652.564 kb on - strand, within GFF1316at 652.595 kb on + strand, within GFF1316at 652.638 kb on + strand, within GFF1316at 652.638 kb on + strand, within GFF1316at 652.638 kb on + strand, within GFF1316at 652.638 kb on + strand, within GFF1316at 652.638 kb on + strand, within GFF1316at 652.639 kb on - strand, within GFF1316at 652.639 kb on - strand, within GFF1316at 652.639 kb on - strand, within GFF1316at 652.965 kb on + strand, within GFF1316at 652.965 kb on + strand, within GFF1316at 652.965 kb on + strand, within GFF1316at 652.965 kb on + strand, within GFF1316at 652.965 kb on + strand, within GFF1316at 652.965 kb on + strand, within GFF1316at 652.965 kb on + strand, within GFF1316at 652.965 kb on + strand, within GFF1316at 652.965 kb on + strand, within GFF1316at 652.966 kb on - strand, within GFF1316at 652.966 kb on - strand, within GFF1316at 652.966 kb on - strand, within GFF1316at 652.966 kb on - strand, within GFF1316at 652.966 kb on - strand, within GFF1316at 652.966 kb on - strand, within GFF1316at 653.058 kb on + strand, within GFF1316at 653.058 kb on + strand, within GFF1316at 653.058 kb on + strand, within GFF1316at 653.058 kb on + strand, within GFF1316at 653.058 kb on + strand, within GFF1316at 653.058 kb on + strand, within GFF1316at 653.058 kb on + strand, within GFF1316at 653.058 kb on + strand, within GFF1316at 653.058 kb on + strand, within GFF1316at 653.059 kb on - strand, within GFF1316at 653.059 kb on - strand, within GFF1316at 653.059 kb on - strand, within GFF1316at 653.059 kb on - strand, within GFF1316at 653.059 kb on - strand, within GFF1316at 653.059 kb on - strand, within GFF1316at 653.059 kb on - strand, within GFF1316at 653.085 kb on + strand, within GFF1316at 653.085 kb on + strand, within GFF1316at 653.086 kb on - strand, within GFF1316at 653.086 kb on - strand, within GFF1316at 653.086 kb on - strand, within GFF1316at 653.086 kb on - strand, within GFF1316at 653.086 kb on - strand, within GFF1316at 653.086 kb on - strand, within GFF1316at 653.086 kb on - strand, within GFF1316at 653.166 kb on + strand, within GFF1316at 653.166 kb on + strand, within GFF1316at 653.166 kb on + strand, within GFF1316at 653.166 kb on + strand, within GFF1316at 653.166 kb on + strand, within GFF1316at 653.166 kb on + strand, within GFF1316at 653.166 kb on + strand, within GFF1316at 653.166 kb on + strand, within GFF1316at 653.167 kb on - strand, within GFF1316at 653.167 kb on - strand, within GFF1316at 653.167 kb on - strand, within GFF1316at 653.167 kb on - strand, within GFF1316at 653.167 kb on - strand, within GFF1316at 653.167 kb on - strand, within GFF1316at 653.167 kb on - strand, within GFF1316at 653.172 kb on + strand, within GFF1316at 653.172 kb on + strand, within GFF1316at 653.172 kb on + strand, within GFF1316at 653.172 kb on + strand, within GFF1316at 653.172 kb on + strand, within GFF1316at 653.173 kb on - strand, within GFF1316at 653.173 kb on - strand, within GFF1316at 653.535 kb on - strand, within GFF1317at 653.684 kb on + strand, within GFF1317at 653.684 kb on + strand, within GFF1317at 653.684 kb on + strand, within GFF1317at 653.684 kb on + strand, within GFF1317at 653.684 kb on + strand, within GFF1317at 653.684 kb on + strand, within GFF1317at 653.685 kb on - strand, within GFF1317at 653.685 kb on - strand, within GFF1317at 653.685 kb on - strand, within GFF1317at 653.685 kb on - strand, within GFF1317at 653.685 kb on - strand, within GFF1317at 653.699 kb on + strand, within GFF1317at 653.699 kb on + strand, within GFF1317at 653.700 kb on - strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.720 kb on + strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.721 kb on - strand, within GFF1317at 653.825 kb on + strand, within GFF1317at 653.825 kb on + strand, within GFF1317at 653.826 kb on - strand, within GFF1317at 653.826 kb on - strand, within GFF1317at 653.826 kb on - strand, within GFF1317at 653.826 kb on - strand, within GFF1317at 653.826 kb on - strand, within GFF1317at 654.184 kb on + strandat 654.184 kb on + strandat 654.184 kb on + strandat 654.184 kb on + strandat 654.184 kb on + strandat 654.184 kb on + strandat 654.185 kb on - strandat 654.185 kb on - strandat 654.185 kb on - strandat 654.185 kb on - strandat 654.185 kb on - strandat 654.185 kb on - strandat 654.649 kb on + strand, within GFF1318at 654.649 kb on + strand, within GFF1318at 654.649 kb on + strand, within GFF1318at 654.649 kb on + strand, within GFF1318at 654.649 kb on + strand, within GFF1318at 654.650 kb on - strand, within GFF1318at 654.650 kb on - strand, within GFF1318at 654.650 kb on - strand, within GFF1318at 654.650 kb on - strand, within GFF1318at 654.650 kb on - strand, within GFF1318at 654.751 kb on + strandat 654.752 kb on - strandat 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.834 kb on + strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 654.835 kb on - strand, within GFF1319at 655.012 kb on + strand, within GFF1319at 655.012 kb on + strand, within GFF1319at 655.012 kb on + strand, within GFF1319at 655.012 kb on + strand, within GFF1319at 655.012 kb on + strand, within GFF1319at 655.012 kb on + strand, within GFF1319at 655.012 kb on + strand, within GFF1319at 655.013 kb on - strand, within GFF1319at 655.013 kb on - strand, within GFF1319at 655.013 kb on - strand, within GFF1319at 655.013 kb on - strand, within GFF1319at 655.013 kb on - strand, within GFF1319at 655.013 kb on - strand, within GFF1319at 655.013 kb on - strand, within GFF1319at 655.013 kb on - strand, within GFF1319at 655.124 kb on + strand, within GFF1319at 655.161 kb on + strandat 655.161 kb on + strandat 655.161 kb on + strandat 655.161 kb on + strandat 655.161 kb on + strandat 655.161 kb on + strandat 655.162 kb on - strandat 655.162 kb on - strandat 655.162 kb on - strandat 655.162 kb on - strandat 655.162 kb on - strandat 655.162 kb on - strandat 655.162 kb on - strandat 655.164 kb on + strandat 655.164 kb on + strandat 655.164 kb on + strandat 655.164 kb on + strandat 655.164 kb on + strandat 655.164 kb on + strandat 655.164 kb on + strandat 655.165 kb on - strandat 655.165 kb on - strandat 655.165 kb on - strandat 655.165 kb on - strandat 655.166 kb on - strandat 655.171 kb on + strandat 655.171 kb on + strandat 655.171 kb on + strandat 655.171 kb on + strandat 655.172 kb on - strandat 655.172 kb on - strandat 655.172 kb on - strandat 655.188 kb on + strandat 655.188 kb on + strandat 655.218 kb on - strandat 655.218 kb on - strandat 655.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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652,563 + GFF1316 0.60 +0.2
652,563 + GFF1316 0.60 +0.4
652,563 + GFF1316 0.60 +0.8
652,563 + GFF1316 0.60 -0.4
652,563 + GFF1316 0.60 +0.0
652,563 + GFF1316 0.60 -0.4
652,563 + GFF1316 0.60 +0.4
652,564 - GFF1316 0.60 +0.9
652,564 - GFF1316 0.60 -1.2
652,564 - GFF1316 0.60 +0.7
652,564 - GFF1316 0.60 -0.4
652,564 - GFF1316 0.60 -0.2
652,564 - GFF1316 0.60 -0.5
652,564 - GFF1316 0.60 -0.2
652,595 + GFF1316 0.61 -0.5
652,638 + GFF1316 0.63 -1.0
652,638 + GFF1316 0.63 -2.1
652,638 + GFF1316 0.63 +0.4
652,638 + GFF1316 0.63 +1.4
652,638 + GFF1316 0.63 -0.7
652,639 - GFF1316 0.63 +0.2
652,639 - GFF1316 0.63 -0.9
652,639 - GFF1316 0.63 +0.4
652,965 + GFF1316 0.79 +1.8
652,965 + GFF1316 0.79 -0.8
652,965 + GFF1316 0.79 -0.7
652,965 + GFF1316 0.79 -1.2
652,965 + GFF1316 0.79 -0.0
652,965 + GFF1316 0.79 +0.3
652,965 + GFF1316 0.79 -1.1
652,965 + GFF1316 0.79 -1.2
652,965 + GFF1316 0.79 -0.1
652,966 - GFF1316 0.79 +0.7
652,966 - GFF1316 0.79 -0.6
652,966 - GFF1316 0.79 -1.1
652,966 - GFF1316 0.79 -0.2
652,966 - GFF1316 0.79 +0.2
652,966 - GFF1316 0.79 -0.6
653,058 + GFF1316 0.83 +0.6
653,058 + GFF1316 0.83 -0.6
653,058 + GFF1316 0.83 +0.8
653,058 + GFF1316 0.83 +0.9
653,058 + GFF1316 0.83 +0.9
653,058 + GFF1316 0.83 -0.6
653,058 + GFF1316 0.83 -0.2
653,058 + GFF1316 0.83 -0.1
653,058 + GFF1316 0.83 +1.2
653,059 - GFF1316 0.83 -0.5
653,059 - GFF1316 0.83 -1.1
653,059 - GFF1316 0.83 +0.1
653,059 - GFF1316 0.83 +1.0
653,059 - GFF1316 0.83 +0.0
653,059 - GFF1316 0.83 +0.2
653,059 - GFF1316 0.83 -0.8
653,085 + GFF1316 0.84 -1.0
653,085 + GFF1316 0.84 +0.1
653,086 - GFF1316 0.84 -0.1
653,086 - GFF1316 0.84 -0.2
653,086 - GFF1316 0.84 -0.6
653,086 - GFF1316 0.84 -0.5
653,086 - GFF1316 0.84 -0.3
653,086 - GFF1316 0.84 +2.4
653,086 - GFF1316 0.84 -1.0
653,166 + GFF1316 0.88 -0.6
653,166 + GFF1316 0.88 +0.8
653,166 + GFF1316 0.88 -0.2
653,166 + GFF1316 0.88 -0.7
653,166 + GFF1316 0.88 -0.9
653,166 + GFF1316 0.88 +0.7
653,166 + GFF1316 0.88 -1.5
653,166 + GFF1316 0.88 -1.0
653,167 - GFF1316 0.88 +0.6
653,167 - GFF1316 0.88 -0.1
653,167 - GFF1316 0.88 -0.2
653,167 - GFF1316 0.88 -0.1
653,167 - GFF1316 0.88 +0.2
653,167 - GFF1316 0.88 -0.1
653,167 - GFF1316 0.88 -0.3
653,172 + GFF1316 0.88 -0.3
653,172 + GFF1316 0.88 +0.2
653,172 + GFF1316 0.88 -0.0
653,172 + GFF1316 0.88 -2.2
653,172 + GFF1316 0.88 -0.3
653,173 - GFF1316 0.88 -0.1
653,173 - GFF1316 0.88 +0.2
653,535 - GFF1317 0.14 +0.0
653,684 + GFF1317 0.32 +0.0
653,684 + GFF1317 0.32 -0.4
653,684 + GFF1317 0.32 -0.5
653,684 + GFF1317 0.32 -0.4
653,684 + GFF1317 0.32 +0.8
653,684 + GFF1317 0.32 -0.5
653,685 - GFF1317 0.33 +0.7
653,685 - GFF1317 0.33 -0.0
653,685 - GFF1317 0.33 +0.1
653,685 - GFF1317 0.33 +0.2
653,685 - GFF1317 0.33 +0.4
653,699 + GFF1317 0.34 -1.7
653,699 + GFF1317 0.34 -0.2
653,700 - GFF1317 0.34 -0.8
653,720 + GFF1317 0.37 -1.2
653,720 + GFF1317 0.37 +0.2
653,720 + GFF1317 0.37 -0.4
653,720 + GFF1317 0.37 -0.2
653,720 + GFF1317 0.37 +0.0
653,720 + GFF1317 0.37 -1.2
653,720 + GFF1317 0.37 -1.0
653,720 + GFF1317 0.37 -0.5
653,720 + GFF1317 0.37 -1.0
653,720 + GFF1317 0.37 +0.2
653,720 + GFF1317 0.37 -0.1
653,721 - GFF1317 0.37 +0.6
653,721 - GFF1317 0.37 +0.8
653,721 - GFF1317 0.37 +0.0
653,721 - GFF1317 0.37 +1.0
653,721 - GFF1317 0.37 +0.0
653,721 - GFF1317 0.37 -0.2
653,721 - GFF1317 0.37 +0.6
653,721 - GFF1317 0.37 -0.2
653,721 - GFF1317 0.37 -0.1
653,721 - GFF1317 0.37 -0.5
653,721 - GFF1317 0.37 -0.4
653,721 - GFF1317 0.37 +0.4
653,721 - GFF1317 0.37 +0.2
653,721 - GFF1317 0.37 +0.0
653,721 - GFF1317 0.37 +0.0
653,721 - GFF1317 0.37 +0.2
653,721 - GFF1317 0.37 -2.1
653,825 + GFF1317 0.50 -0.3
653,825 + GFF1317 0.50 -0.6
653,826 - GFF1317 0.50 -1.1
653,826 - GFF1317 0.50 +0.2
653,826 - GFF1317 0.50 +0.6
653,826 - GFF1317 0.50 +0.1
653,826 - GFF1317 0.50 +0.4
654,184 + +0.0
654,184 + -0.9
654,184 + +0.1
654,184 + +0.0
654,184 + +0.0
654,184 + -2.0
654,185 - -0.1
654,185 - +0.0
654,185 - -0.6
654,185 - -0.6
654,185 - -0.1
654,185 - +0.2
654,649 + GFF1318 0.85 -0.5
654,649 + GFF1318 0.85 +0.1
654,649 + GFF1318 0.85 -0.6
654,649 + GFF1318 0.85 +1.1
654,649 + GFF1318 0.85 +0.0
654,650 - GFF1318 0.85 +0.0
654,650 - GFF1318 0.85 +0.1
654,650 - GFF1318 0.85 +1.0
654,650 - GFF1318 0.85 -0.1
654,650 - GFF1318 0.85 +0.3
654,751 + -1.0
654,752 - -1.0
654,834 + GFF1319 0.24 -0.8
654,834 + GFF1319 0.24 -0.3
654,834 + GFF1319 0.24 -0.6
654,834 + GFF1319 0.24 +0.5
654,834 + GFF1319 0.24 -1.2
654,834 + GFF1319 0.24 -0.2
654,834 + GFF1319 0.24 -0.6
654,834 + GFF1319 0.24 -0.9
654,834 + GFF1319 0.24 -1.6
654,834 + GFF1319 0.24 -0.5
654,834 + GFF1319 0.24 -0.3
654,834 + GFF1319 0.24 -1.5
654,834 + GFF1319 0.24 +0.8
654,834 + GFF1319 0.24 -0.8
654,834 + GFF1319 0.24 -0.2
654,835 - GFF1319 0.24 +0.4
654,835 - GFF1319 0.24 -0.6
654,835 - GFF1319 0.24 +1.0
654,835 - GFF1319 0.24 +0.1
654,835 - GFF1319 0.24 +0.0
654,835 - GFF1319 0.24 +1.0
654,835 - GFF1319 0.24 +0.0
654,835 - GFF1319 0.24 -1.2
654,835 - GFF1319 0.24 -1.0
654,835 - GFF1319 0.24 +0.4
654,835 - GFF1319 0.24 +1.9
654,835 - GFF1319 0.24 +0.1
654,835 - GFF1319 0.24 -0.5
654,835 - GFF1319 0.24 -0.1
654,835 - GFF1319 0.24 +0.0
655,012 + GFF1319 0.62 +0.9
655,012 + GFF1319 0.62 -1.2
655,012 + GFF1319 0.62 -0.7
655,012 + GFF1319 0.62 -0.2
655,012 + GFF1319 0.62 -0.2
655,012 + GFF1319 0.62 -0.2
655,012 + GFF1319 0.62 -1.1
655,013 - GFF1319 0.62 -0.2
655,013 - GFF1319 0.62 +0.1
655,013 - GFF1319 0.62 -0.1
655,013 - GFF1319 0.62 +0.1
655,013 - GFF1319 0.62 -0.3
655,013 - GFF1319 0.62 +0.6
655,013 - GFF1319 0.62 -1.0
655,013 - GFF1319 0.62 -0.3
655,124 + GFF1319 0.85 -0.4
655,161 + +0.5
655,161 + -0.5
655,161 + +0.8
655,161 + -0.2
655,161 + +0.1
655,161 + +0.2
655,162 - +0.8
655,162 - +0.4
655,162 - -0.8
655,162 - -1.0
655,162 - +0.4
655,162 - -0.6
655,162 - -0.6
655,164 + -1.7
655,164 + -0.7
655,164 + -0.6
655,164 + +0.1
655,164 + -0.6
655,164 + +0.5
655,164 + +0.7
655,165 - +0.7
655,165 - +0.3
655,165 - -0.2
655,165 - +0.5
655,166 - +0.5
655,171 + -0.2
655,171 + -1.6
655,171 + +1.4
655,171 + -1.0
655,172 - -0.5
655,172 - +0.8
655,172 - -0.4
655,188 + +0.8
655,188 + -0.2
655,218 - -0.2
655,218 - -0.0
655,218 - -0.5

Or see this region's nucleotide sequence