Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1288 and GFF1289 are separated by 1 nucleotides GFF1289 and GFF1290 are separated by 19 nucleotides GFF1290 and GFF1291 overlap by 4 nucleotides GFF1291 and GFF1292 are separated by 211 nucleotides
GFF1288 - Sulfate transport system permease protein CysT, at 615,310 to 616,197
GFF1288
GFF1289 - Sulfate transport system permease protein CysW, at 616,199 to 617,101
GFF1289
GFF1290 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 617,121 to 618,218
GFF1290
GFF1291 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 618,215 to 618,718
GFF1291
GFF1292 - Macrolide-specific efflux protein MacA, at 618,930 to 620,087
GFF1292
Position (kb) 617
618
619 Strain fitness (log2 ratio) -1
0
1 at 616.365 kb on - strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.821 kb on - strand, within GFF1289 at 616.821 kb on - strand, within GFF1289 at 616.935 kb on - strand, within GFF1289 at 616.935 kb on - strand, within GFF1289 at 616.943 kb on + strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 617.367 kb on + strand, within GFF1290 at 617.368 kb on - strand, within GFF1290 at 617.821 kb on - strand, within GFF1290 at 617.943 kb on + strand, within GFF1290 at 617.943 kb on + strand, within GFF1290 at 617.976 kb on + strand, within GFF1290 at 617.976 kb on + strand, within GFF1290 at 617.976 kb on + strand, within GFF1290 at 617.977 kb on - strand, within GFF1290 at 617.977 kb on - strand, within GFF1290 at 617.977 kb on - strand, within GFF1290 at 618.193 kb on + strand at 618.193 kb on + strand at 618.193 kb on + strand at 618.193 kb on + strand at 618.194 kb on - strand at 618.194 kb on - strand at 618.208 kb on + strand at 618.208 kb on + strand at 618.208 kb on + strand at 618.829 kb on + strand at 618.830 kb on - strand at 618.840 kb on - strand at 618.887 kb on - strand at 618.938 kb on + strand at 618.963 kb on + strand at 618.963 kb on + strand at 618.964 kb on - strand at 618.964 kb on - strand at 618.964 kb on - strand at 618.964 kb on - strand at 619.041 kb on + strand at 619.041 kb on + strand at 619.041 kb on + strand at 619.041 kb on + strand at 619.042 kb on - strand at 619.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 616,365 - GFF1289 0.18 -1.6 616,568 + GFF1289 0.41 -0.2 616,568 + GFF1289 0.41 -0.4 616,568 + GFF1289 0.41 -0.4 616,568 + GFF1289 0.41 +1.4 616,568 + GFF1289 0.41 +0.5 616,568 + GFF1289 0.41 -0.0 616,568 + GFF1289 0.41 -0.5 616,568 + GFF1289 0.41 -0.5 616,569 - GFF1289 0.41 +0.2 616,569 - GFF1289 0.41 -1.5 616,569 - GFF1289 0.41 -0.3 616,569 - GFF1289 0.41 +0.2 616,569 - GFF1289 0.41 +0.8 616,569 - GFF1289 0.41 -0.2 616,569 - GFF1289 0.41 -1.2 616,569 - GFF1289 0.41 +0.8 616,569 - GFF1289 0.41 -0.1 616,569 - GFF1289 0.41 -0.6 616,569 - GFF1289 0.41 -0.1 616,569 - GFF1289 0.41 -0.0 616,569 - GFF1289 0.41 +0.1 616,569 - GFF1289 0.41 +1.4 616,569 - GFF1289 0.41 +0.5 616,569 - GFF1289 0.41 +0.4 616,821 - GFF1289 0.69 +0.6 616,821 - GFF1289 0.69 +0.4 616,935 - GFF1289 0.82 +0.1 616,935 - GFF1289 0.82 -0.4 616,943 + GFF1289 0.82 -0.9 616,944 - GFF1289 0.83 -0.3 616,944 - GFF1289 0.83 -0.7 616,944 - GFF1289 0.83 +0.4 617,367 + GFF1290 0.22 -0.6 617,368 - GFF1290 0.22 +0.2 617,821 - GFF1290 0.64 +0.2 617,943 + GFF1290 0.75 -0.5 617,943 + GFF1290 0.75 -0.6 617,976 + GFF1290 0.78 +0.1 617,976 + GFF1290 0.78 +1.4 617,976 + GFF1290 0.78 +0.9 617,977 - GFF1290 0.78 -0.0 617,977 - GFF1290 0.78 -0.1 617,977 - GFF1290 0.78 -0.3 618,193 + +0.7 618,193 + +0.4 618,193 + +0.6 618,193 + -0.9 618,194 - +0.4 618,194 - +0.4 618,208 + -0.2 618,208 + -0.3 618,208 + +0.5 618,829 + -0.0 618,830 - +0.3 618,840 - -0.6 618,887 - +1.5 618,938 + -0.4 618,963 + -0.6 618,963 + +0.0 618,964 - -0.1 618,964 - -1.0 618,964 - -0.2 618,964 - -0.6 619,041 + +1.4 619,041 + -0.4 619,041 + +0.4 619,041 + -0.5 619,042 - -0.0 619,042 - -0.9
Or see this region's nucleotide sequence