Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF127 and GFF128 are separated by 31 nucleotides GFF128 and GFF129 are separated by 180 nucleotides GFF129 and GFF130 are separated by 196 nucleotides GFF130 and GFF131 are separated by 120 nucleotides
GFF127 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 155,944 to 156,627
GFF127
GFF128 - hypothetical protein, at 156,659 to 156,985
GFF128
GFF129 - Ankyrin, at 157,166 to 158,812
GFF129
GFF130 - hypothetical protein, at 159,009 to 159,206
GFF130
GFF131 - L-glyceraldehyde 3-phosphate reductase, at 159,327 to 160,367
GFF131
Position (kb) 157
158
159 Strain fitness (log2 ratio) -1
0
1
2 at 156.253 kb on + strand, within GFF127 at 156.254 kb on - strand, within GFF127 at 156.254 kb on - strand, within GFF127 at 156.625 kb on + strand at 156.728 kb on + strand, within GFF128 at 156.728 kb on + strand, within GFF128 at 156.729 kb on - strand, within GFF128 at 156.779 kb on + strand, within GFF128 at 156.809 kb on + strand, within GFF128 at 156.809 kb on + strand, within GFF128 at 156.810 kb on - strand, within GFF128 at 156.810 kb on - strand, within GFF128 at 156.821 kb on + strand, within GFF128 at 156.822 kb on - strand, within GFF128 at 156.822 kb on - strand, within GFF128 at 156.959 kb on + strand at 156.959 kb on + strand at 156.959 kb on + strand at 157.469 kb on + strand, within GFF129 at 157.469 kb on + strand, within GFF129 at 157.469 kb on + strand, within GFF129 at 157.470 kb on - strand, within GFF129 at 157.470 kb on - strand, within GFF129 at 157.565 kb on + strand, within GFF129 at 157.566 kb on - strand, within GFF129 at 157.928 kb on + strand, within GFF129 at 157.928 kb on + strand, within GFF129 at 157.928 kb on + strand, within GFF129 at 158.787 kb on - strand at 158.810 kb on + strand at 158.810 kb on + strand at 158.864 kb on + strand at 158.864 kb on + strand at 158.981 kb on + strand at 158.982 kb on - strand at 158.982 kb on - strand at 159.079 kb on + strand, within GFF130 at 159.080 kb on - strand, within GFF130 at 159.080 kb on - strand, within GFF130 at 159.187 kb on + strand at 159.187 kb on + strand at 159.188 kb on - strand at 159.285 kb on - strand at 159.382 kb on + strand at 159.382 kb on + strand at 159.383 kb on - strand at 159.383 kb on - strand at 159.383 kb on - strand at 159.383 kb on - strand at 159.667 kb on + strand, within GFF131 at 159.667 kb on + strand, within GFF131 at 159.667 kb on + strand, within GFF131 at 159.667 kb on + strand, within GFF131 at 159.668 kb on - strand, within GFF131 at 159.668 kb on - strand, within GFF131 at 159.778 kb on + strand, within GFF131 at 159.779 kb on - strand, within GFF131
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 156,253 + GFF127 0.45 -0.8 156,254 - GFF127 0.45 -0.2 156,254 - GFF127 0.45 -1.5 156,625 + +0.3 156,728 + GFF128 0.21 -1.7 156,728 + GFF128 0.21 -0.7 156,729 - GFF128 0.21 -1.1 156,779 + GFF128 0.37 -0.5 156,809 + GFF128 0.46 -0.6 156,809 + GFF128 0.46 +0.9 156,810 - GFF128 0.46 +0.1 156,810 - GFF128 0.46 -0.4 156,821 + GFF128 0.50 -0.6 156,822 - GFF128 0.50 -0.5 156,822 - GFF128 0.50 -1.1 156,959 + -0.5 156,959 + -0.4 156,959 + -0.6 157,469 + GFF129 0.18 -0.6 157,469 + GFF129 0.18 +0.4 157,469 + GFF129 0.18 -1.2 157,470 - GFF129 0.18 -0.6 157,470 - GFF129 0.18 -0.1 157,565 + GFF129 0.24 -0.4 157,566 - GFF129 0.24 +1.7 157,928 + GFF129 0.46 -0.3 157,928 + GFF129 0.46 -0.1 157,928 + GFF129 0.46 +0.6 158,787 - +2.3 158,810 + -0.6 158,810 + -0.7 158,864 + -0.6 158,864 + -0.6 158,981 + -0.3 158,982 - +0.7 158,982 - -0.7 159,079 + GFF130 0.35 -0.5 159,080 - GFF130 0.36 +0.6 159,080 - GFF130 0.36 -1.0 159,187 + +1.3 159,187 + -0.3 159,188 - +0.4 159,285 - -0.0 159,382 + +0.1 159,382 + -1.0 159,383 - -0.5 159,383 - -1.3 159,383 - -0.1 159,383 - +0.1 159,667 + GFF131 0.33 -0.9 159,667 + GFF131 0.33 -0.3 159,667 + GFF131 0.33 -0.0 159,667 + GFF131 0.33 +0.9 159,668 - GFF131 0.33 +0.5 159,668 - GFF131 0.33 +0.1 159,778 + GFF131 0.43 +0.3 159,779 - GFF131 0.43 -0.5
Or see this region's nucleotide sequence